Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00676 ATGATCCTTGCGCTTTCAACGGATGTTGACCAAGTTGGCTCAGCTAGAAGAAGCCCTAGTTTGTGCTCTCCACACGCTTCCCTGCATACGAATGCTTTGATCATGGCTTCTGCAGCCTCTTCGCTCCTACGAGCATCTCGCTCCGTGCTTGCTTCCCCTACCTCCACTTCTGTTTATAGAGCCTTCTCTCGCTCCGCTCCTCGCCGATTACCCGGCTCCTCCGCCGCCGCGCGCTCCTTTGGCTCCGCCGTTCCGCGATGGAGCCACGGCGTCGATTGGCGCTCTCCACTCGGCCTCCGCCATCAGATCAGAGCCGTCGCTCCCCTCATCGAACGCTTCCACCGGAAGATCGCCACTAGTGCTCTTGATAATCCTTTCAAGGGAAATCTAACGAGTCTCCCTAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGCCTTCCGTCTCTCAATGATCCGAGAATTGATAGGTTACCATACTCTATCAGAATTCTCCTTGAATCAGCCATCCGTAATTGTGACAACTTCCAAGTTACCAAAGAAGATGTTGAGAAGATTATTGACTGGGAAAACTCTTGTGTGAAACAAGTTGAGATTCCTTTCAAGCCTGCTCGCGTTCTACTGCAGGATTTTACTGGAGTCCCTGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCTAATAAGATCAATCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCCGTTCAAGTTGATGTAGCAAGGTCAGAGAATGCAGTGCAGGCCAATATGGAGCTTGAGTTCCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCTAATGCCTTCCGTAACATGCTTGTTGTCCCTCCTGGTTCTGGTATAGTACATCAGGTTAATCTTGAATATCTTGGACGTGTTGTTTTCAACAATGAAGGCCTGCTTTATCCTGACAGTGTTGTTGGGACTGATTCACATACAACAATGATTGATGGGCTTGGAGTTGCTGGATGGGGTGTTGGGGGTATTGAAGCAGAGGCAGCAATGCTTGGCCAGCCTATGAGCATGGTGTTACCTGGTGTTGTTGGGTTCAAGTTATCTGGAAAATTGCGAAATGGAGTTACAGCAACTGACTTGGTTCTAACTGTGACACAAATTCTTAGGAAACATGGTGTTGTGGGGAAATTTGTTGAATTTTATGGTGATGGCATGGGTGAGCTATCATTAGCAGATAGGGCAACAATTGCGAATATGTCTCCTGAATATGGTGCAACCATGGGCTTCTTCCCTGTAGATCACGTTACATTACAATACCTCAAGTTAACTGGAAGAAGTGATGAAACTGTGGCAATGATAGAGGCCTATCTCAGGGCAAACAAATTGTTTATTGACTATAATGAGCCTCAACCTGATAGAGTTTATTCATCCTATCTTGAATTGAACCTTGATGAAGTCGAACCATGCATCTCAGGACCCAAGAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGACTGGCATGCTTGTCTAGACAACAAAGTGGGATTTAAGGGATTTGCTATACCAAAAGATGTACAAGGAAAAGTTGCAAAATTTGATTTTCATGGGCAGCCAGCGGAGCTCAAGCATGGTAGTGTTGTGATTGCTGCAATCACAAGCTGTACGAATACATCAAACCCAAGTGTTATGCTTGGGGCTGGTCTCGTGGCAAAGAAGGCACATGATCTTGGTTTGAAGATTGTAACTGTAGATGCTTTCACTGGTTGCCAGGTTAAGCCATGGGTAAAAACAAGTCTTGCTCCTGGATCTGGAGTTGTTACAAAATATCTACTTCAGAGTGGCCTGCAAAAGTACCTAAATGAACAGGGTTTCAATATTGTTGGATTTGGCTGTACCACATGTATTGGCAATTCTGGGGAACTAGACCCGTCAGTAGCTTCTGCTATTTCTGAAAATGACATAGTGGCTTCTGCTGTGTTGTCTGGGAACCGTAATTTTGAGGGCCGTGTGCATCCCTTGACAAGAGCTAACTACCTTGCGTCACCACCTCTAGTTGTTGCTTATGCTCTTGCTGGCACAGTGGACATTGACTTTGAAAAGGAGCCAATAGGAACAGGGAAGGATGGAAAGAATATTTACTTGAGGGATATTTGGCCATCCACTCAAGAAATTGCAGATGCTGTTCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAAGCTATTACCAAAGGTAACACTATGTGGAACCAACTCCAAGTTCCCACCGAGACCCTGTACTCATGGGACCCCAAGTCAACATACATTCATGAACCTCCATACTTCAAGGGCATGACCATGGATCCACCCGGAGCTCATGGTGTGAAAGATGCCTACTGTCTGCTGAATTTTGGTGACAGCATAACAACTGATCACATTTCTCCTGCTGGAAACATTAACAAGGACAGTCCAGCTGCAAAATACCTTCTGGAGCGAGGGGTGGAACAAAAAGACTTCAATTCATATGGAAGTCGCCGTGGCAATGATGAAGTGATGGCGAGGGGAACTTTTGCAAACATTCGTCTTGTTAACAAGCTCTTGAATGGGGAGGTTGGCCCCAAGACAGTTCACATTCCCACAGGGGAGAAGCTTTACGTGTTTGATGCCGCGCAGAGATACAAGGCCGAAGGGAAGGACACCATTGTTCTGGCTGGAGCTGAGTATGGTAGTGGGAGTTCCAGAGATTGGGCCGCTAAGGGTCCCATGCTATTGGGTGTCAAAGCTGTGATAGCTAAAAGTTTTGAGAGAATCCATCGTAGTAATTTGGTAGGAATGGGTATTATTCCTCTTTGCTTTAAATCTGGTGAGGACGCTGACACATTAGGATTGACCGGTCACGAGCGTTATTCTATTGATCTCCCGAGTAAAATCAGCGAGATAAGGCCTGGCCAAGATGTCACCGTAACAACGGATAATGGAAAATCTTTCATCTGCACAGTTCGCTTCGACACTGAGGTGGAACTTGCTTACTTTAACAATGGGGGCATACTTCCGTATGTGATCAGGAACCTCACTAAGCAGTGA 3087 0.4616 MILALSTDVDQVGSARRSPSLCSPHASLHTNALIMASAASSLLRASRSVLASPTSTSVYRAFSRSAPRRLPGSSAAARSFGSAVPRWSHGVDWRSPLGLRHQIRAVAPLIERFHRKIATSALDNPFKGNLTSLPKPGGGEFGKFYSLPSLNDPRIDRLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWENSCVKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSNAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKLFIDYNEPQPDRVYSSYLELNLDEVEPCISGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAIPKDVQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHDLGLKIVTVDAFTGCQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGFGCTTCIGNSGELDPSVASAISENDIVASAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKNIYLRDIWPSTQEIADAVQSSVLPDMFRSTYEAITKGNTMWNQLQVPTETLYSWDPKSTYIHEPPYFKGMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGNINKDSPAAKYLLERGVEQKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHIPTGEKLYVFDAAQRYKAEGKDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYSIDLPSKISEIRPGQDVTVTTDNGKSFICTVRFDTEVELAYFNNGGILPYVIRNLTKQ 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00676 1028 SUPERFAMILY LeuD/IlvD-like 767 1025 - -
Vian11g00676 1028 Gene3D - 727 788 - -
Vian11g00676 1028 SUPERFAMILY Aconitase iron-sulfur domain 138 763 IPR036008 -
Vian11g00676 1028 NCBIfam aconitate hydratase AcnA 142 1025 IPR006249 -
Vian11g00676 1028 FunFam Aconitate hydratase 790 1027 - -
Vian11g00676 1028 ProSitePatterns Aconitase family signature 1. 552 568 IPR018136 -
Vian11g00676 1028 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 121 1025 IPR006249 -
Vian11g00676 1028 Gene3D Aconitase, domain 3 123 491 IPR015931 -
Vian11g00676 1028 Pfam Aconitase family (aconitate hydratase) 184 698 IPR001030 -
Vian11g00676 1028 Pfam Aconitase C-terminal domain 827 954 IPR000573 -
Vian11g00676 1028 CDD AcnA_IRP 205 700 - -
Vian11g00676 1028 PRINTS Aconitase family signature 333 348 IPR001030 -
Vian11g00676 1028 PRINTS Aconitase family signature 629 642 IPR001030 -
Vian11g00676 1028 PRINTS Aconitase family signature 319 332 IPR001030 -
Vian11g00676 1028 PRINTS Aconitase family signature 409 422 IPR001030 -
Vian11g00676 1028 PRINTS Aconitase family signature 266 279 IPR001030 -
Vian11g00676 1028 PRINTS Aconitase family signature 290 298 IPR001030 -
Vian11g00676 1028 PRINTS Aconitase family signature 395 408 IPR001030 -
Vian11g00676 1028 PRINTS Aconitase family signature 491 505 IPR001030 -
Vian11g00676 1028 FunFam Aconitate hydratase 124 491 - -
Vian11g00676 1028 FunFam cytoplasmic aconitate hydratase 492 726 - -
Vian11g00676 1028 Gene3D Aconitase, domain 3 492 726 IPR015931 -
Vian11g00676 1028 CDD AcnA_IRP_Swivel 804 974 IPR044137 -
Vian11g00676 1028 ProSitePatterns Aconitase family signature 2. 629 642 IPR018136 -
Vian11g00676 1028 Gene3D Aconitase, domain 4 791 1027 IPR015928 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00676 Vian-Chr11 7114751 7124075 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00676 K01681 - gmx:100810088 1861.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00676 11 7114751 7124075 Vian11g00676 11 7114751 7124075 ECH
Vian11g00676 11 7114751 7124075 Vian5g00919 5 30295961 30305018 PCT