Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00533 ATGGCGGCAGCGGATTTTGCAATATCCGTCGCGTTGTTGTTGTTGTTGGCGGCAGTTGATGCCGGATCGCCGGTGAGTCTGCCTCTGGAAAGAGCGTTTCCGACGAATCACGGAGTGGAGTTGAGTCAGCTGAGAGCTCGCGATGCGCTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTTGATTTCCCCGTCCAAGGCACCTACGATCCCTTCCAAGTCGGGCTTTACTTTACAAAGGTACAGTTGGGTACTCCTCCAGTGGAATTTTATGTGCAGATTGATACTGGCAGTGATGTTCTCTGGGTTAGTTGTAACTCCTGCAGTGGTTGTCCTCAGACAAGTGGGCTTCAGATTCAGTTAAATTTTTTTGACCCGGGGAGTTCGTCAACATCTTCACTGATCGCTTGTTCTGACCAAAGGTGCAACAGTGGCATACAGTCATCAGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCTCATACACTTTCCAGTATGGGGATGGCAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACTATTTTTGAGGGTTCTGTGACCACCAATTCTACAGCGCCTGTAGTTTTTGGCTGTAGCAACCAGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGAATATTTGGATTTGGGCAACAGGAAATGTCTGTCATCTCCCAGCTCTCCTCACAGGGGATAGCTCCAAGAGTATTCTCTCATTGTCTGAAAGGAGATAGCACTGGAGGTGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTACACCTCACTTGTTCCAGCACAGCCTCATTACAACTTAAATCTACAGAGCATCTCTGTCAATGGCCAGACGTTGCAAATTGATTCTTCAGTTTTTTCAACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTATCTTGCTGAAGAGGCTTATGATCCCTTTGTCAATGCGATCACAGCTACAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAATCAGTGTTACTTACTCACCACTAGTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCCGGTGGGGCATCTATGCTTTTAAGACCACAGGACTACCTAATACAGCAGAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGTTTTCAAAAACTCCAGGGTCAAGGAGTAACAATTCTAGGAGATCTCGTGTTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTTTGACTCTTCTGATGCTGTTCTTTTCGAATTCAACAACGTAGGTTCTTTGTCAGTGAATGTCTCTGCAACAACTGGCACCGGCAGAAGTGAATTTGTGAATGCTGGAGAGGTAGGTGGAAGCATTTCTTTACGCGATGGACTTAAGTTGACAAAGACAGGGTTCTTGGCTTTCCTTGTGCATCTAACACTAATTTACTGCTTTGGATTCTTATAG 1521 0.455 MAAADFAISVALLLLLAAVDAGSPVSLPLERAFPTNHGVELSQLRARDALRHRRMLQSSNGVVDFPVQGTYDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCNSCSGCPQTSGLQIQLNFFDPGSSSTSSLIACSDQRCNSGIQSSDASCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSTGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSISVNGQTLQIDSSVFSTSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCYLLTTSVTDVFPQVSLNFAGGASMLLRPQDYLIQQNSIGGAAVWCIGFQKLQGQGVTILGDLVLKDKIVVYDLAGQRIGWANFDSSDAVLFEFNNVGSLSVNVSATTGTGRSEFVNAGEVGGSISLRDGLKLTKTGFLAFLVHLTLIYCFGFL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00533 506 ProSiteProfiles Peptidase family A1 domain profile. 79 434 IPR033121 -
Vian11g00533 506 FunFam Aspartic proteinase-like protein 2 266 444 - -
Vian11g00533 506 PANTHER ASPARTYL PROTEASES 14 432 IPR001461 GO:0004190|GO:0006508
Vian11g00533 506 Pfam Xylanase inhibitor C-terminal 282 434 IPR032799 -
Vian11g00533 506 Gene3D Acid Proteases 266 447 IPR021109 -
Vian11g00533 506 FunFam Aspartic proteinase-like protein 2 62 265 - -
Vian11g00533 506 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Vian11g00533 506 Gene3D Acid Proteases 53 265 IPR021109 -
Vian11g00533 506 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Vian11g00533 506 PRINTS Pepsin (A1) aspartic protease family signature 410 425 IPR001461 GO:0004190|GO:0006508
Vian11g00533 506 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Vian11g00533 506 CDD pepsin_A_like_plant 79 434 IPR034161 -
Vian11g00533 506 SUPERFAMILY Acid proteases 74 438 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00533 Vian-Chr11 5350133 5353725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00533 53 437 Miscellaneous Gene Families AT1G44130 27.250 6.26e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00533 - - gmx:100791299 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00533 11 5350133 5353725 Vian11g00533 11 5350133 5353725 ECH
Vian11g00533 11 5350133 5353725 Vian5g01095 5 32887154 32891433 PCT