Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00144 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAATGTGTGGATCTACATCCAACAGAACCATGGATTCTGGCGAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTTGAGGTTACTGAGTTACCAGTTAGATCAGCCAAGTTTATTGCACGCAGACAATGGGTTGTTGCCGGAGCCGATGATATGTTTATTCGTGTATATAATTATAACACGATGGATAAGGTCAAAGTATTTGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCTTATGTGCTTTCATCATCTGATGATATGCTCATAAAACTCTGGGATTGGGAAAAAGGCTGGGTCTGTACCCAAATATTTGAAGGCCATTCTCATTATGTCATGCAAGTCACATTTAATCCCAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGGACCATAAAGATTTGGAATCTTGGCTCACCTGACCCTAATTTTACATTGGATGCGCATCAGAAAGGAGTAAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAGGTTGTGTCCAGACCCTAGATGGTCACACACACAATGTATCTGCTGTATGCTTCCATCCTGAACTTCCTATAATCATTACTGGTTCTGAAGATGGTACAGTACGCATATGGCACTCCACAACTTATAGGCTGGAAAACACATTGAACTATGGCCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGGGTTCACGTCGAGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAGGTACCTGTGGCTAGCATGGACAACAGCGGCAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATCAAAAGTGTAGGAGCAGATGTTGAGATTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACATGTGATCTCTATCCCCAAAATTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCTTGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTTTGAGGGAGAATATGCTGTCAGAGAAAGTACATCAAAGATTAAAATCTTTAGCAAAAATTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCGCTTTATTGGCAATGTGCTCCAACGACTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATATATCGCATTGATGTCAATGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTATGTCACATTTAGACAGTGGAAAACCGGTAGACGAGGAAGGTGTTGAAGATGCTTTTGAACTCTTACATGAAATGAATGAGCGTGTTAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAACTACTGCGTTGGTGGTGAGGTTACTACAATGTTTCATTTAGATCGCCCTATGTACTTGTTGGGATATCTTGCAAATCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCACTTTCTGGAATCACGAGGGATGATAGAAGATGCTCTTGAAGTAGCCACTGACCCTGACTACAGATTTGATCTAGCGATACGTCTTGGAAAACTAGATGTTGCAAAGAGTATTGCAATAGAATTACAGAGCGAGTCTAAATGGAAACAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAATGTTTGCAACATGCAATGGATTTGAGTGGTTTGTTACTCCTATATTCTTCTCTAGGAGATGCTGAAGGAATATCGAAACTTGCATCTCTTGCTAAGGAACAAGGGAAAAACAATGTTGCATTCCTATGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTATTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTAGATCTTATCTTCCGAGCAAGGCGTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCAAAGGCTGCTGAATCATTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGACTGGCAAGTTGCACTTGGTGTTGAATCTAAAGCTGCGGAAACAAGGAATGTGTACCCTCCTGCAGACCAGTACGTCAACCATGCTGACAAATCACACATTACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGAGGAACATCTAGATAATGGGTTGACTGAAGAAAATGGAGAAGAGCACTACACAGAGGAACAAATTGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGAAGAAGACTGGGTGCTTGCCCCACATCACTAG 2724 0.4115 MPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKGCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEIADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSFEGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGALLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVMSHLDSGKPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIRLGKLDVAKSIAIELQSESKWKQLGELAMSTGKLEMAEECLQHAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKASEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALGVESKAAETRNVYPPADQYVNHADKSHITLVEAFRNMQIEEEEHLDNGLTEENGEEHYTEEQIGEEGSQEEAVVVDADSTDGAVLVNGNEAEEDWVLAPHH 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00144 907 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Vian11g00144 907 SUPERFAMILY WD40 repeat-like 227 496 IPR036322 GO:0005515
Vian11g00144 907 Gene3D - 11 300 IPR015943 GO:0005515
Vian11g00144 907 Gene3D - 590 798 - -
Vian11g00144 907 PANTHER COATOMER 5 313 - -
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Vian11g00144 907 CDD WD40 17 297 - -
Vian11g00144 907 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vian11g00144 907 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Vian11g00144 907 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Vian11g00144 907 FunFam Coatomer subunit beta 590 798 - -
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Vian11g00144 907 FunFam Coatomer subunit beta 11 300 - -
Vian11g00144 907 Pfam WD domain, G-beta repeat 221 256 IPR001680 GO:0005515
Vian11g00144 907 Pfam WD domain, G-beta repeat 18 43 IPR001680 GO:0005515
Vian11g00144 907 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Vian11g00144 907 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Vian11g00144 907 Pfam WD domain, G-beta repeat 133 171 IPR001680 GO:0005515
Vian11g00144 907 PIRSF Beta'-COP 2 884 IPR016453 -
Vian11g00144 907 CDD Coatomer_WDAD_beta-like 304 779 - -
Vian11g00144 907 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vian11g00144 907 SMART WD40_4 174 215 IPR001680 GO:0005515
Vian11g00144 907 SMART WD40_4 4 43 IPR001680 GO:0005515
Vian11g00144 907 SMART WD40_4 46 85 IPR001680 GO:0005515
Vian11g00144 907 SMART WD40_4 88 127 IPR001680 GO:0005515
Vian11g00144 907 SMART WD40_4 131 171 IPR001680 GO:0005515
Vian11g00144 907 SMART WD40_4 218 257 IPR001680 GO:0005515
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Vian11g00144 907 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00144 Vian-Chr11 1272817 1285105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00144 15 367 Miscellaneous Gene Families AT5G08390 19.890 5.65e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00144 K17302 - gmx:100815780 1770.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00144 11 1272817 1285105 Vian11g00144 11 1272817 1285105 ECH
Vian11g00144 11 1272817 1285105 Vian9g00141 9 1140691 1150190 PCT