Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00075 ATGGTTCTGGCGGAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCGACGGTGATCGACGAGAAGGTGCTGAACGATTGCCTCAACGACATCACTCGCGCTCTTCTCCAATCCGATGTGCAATTCAAGCTTGTGCGCGACATGCAGACGAACATCAAGAACATTGTCAACCTCGACGATCTGGCTGCCGGGCACAACAAACGCAGGATCATTCAACAAGCTGTGTTTAACGAACTCTGCAAGATACTGGATCCTGGGAAGCCCTCTTTTACTCCCAAAAAGGGAAAAACAAGTGTTGTCATGTTTGTTGGTTTGCAAGGTTCTGGGAAAACCACAACCTGTACAAAATACGCATATTATCATCAGAAGAAAGGCTGGAAACCAGCTCTAGTATGTGCGGATACGTTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCCACCAAAGCTAAAATCCCTTTCTATGGAAGCTATATGGAATCTGATCCTGTAAAAATTGCAGTGGAAGGTGTGGAGAGATTCAAGGAAGAAAACTGTGATCTTATAATCGTTGATACCAGTGGGAGGCACAAGCAGGAAGCTGCTCTTTTTGAAGAAATGCGTCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAGGCGTTTAAACAGAGTGTTGCAGTTGGAGCTGTAATAGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGAAGTTGTGCCTATGGATCAACAACCCGAACTACTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTATTTTCTATGCTTCCCGGATTTAGTGCCGAATTAATGCCAAAGGGCCGTGAGAAAGAAAGCCAGGCAAAAATCAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGGCAGGCATTATGTTTTTACTGTCGTGATCAACTTTATATGCATGCATGATTTAGAGTTGGATAGTTCAAACCCAAAGCTCATGAATGAATCACGTATCATGCGGATAGCCCGAGGTGCAGGTCGTCAAATTAGGGAAGTGATGGAGATGATGGAAGAGTACAAACGTCTTGCAAAAATATGGAGCAAAATGAAAGGACTAAAAATACCGAAGAAAGGTGAAATGAGTGCCCTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTCCCTCCGCAGATGCTGAAACAAATCGGTGGCATGGGCGGGTTACAAAACTTGATGAAGCAGATGGGATCTGCCAAAGACATGATGGGAATGGGAGGATTGTTTGGTGGTGGCGGTGATTAG 1512 0.4398 MVLAELGGSISRALQQMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKEENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEGRHYVFTVVINFICMHDLELDSSNPKLMNESRIMRIARGAGRQIREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGLFGGGGD 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00075 503 SMART AAA_5 100 277 IPR003593 GO:0016887
Vian11g00075 503 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Vian11g00075 503 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 489 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vian11g00075 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 296 IPR027417 -
Vian11g00075 503 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Vian11g00075 503 FunFam Signal recognition particle 54 kDa subunit 90 285 - -
Vian11g00075 503 Gene3D - 91 285 IPR027417 -
Vian11g00075 503 FunFam Signal recognition particle 54 kDa protein 298 456 - -
Vian11g00075 503 Gene3D - 301 456 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vian11g00075 503 FunFam Signal recognition particle GTPase 5 97 - -
Vian11g00075 503 NCBIfam signal recognition particle protein SRP54 2 432 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Vian11g00075 503 CDD SRP54_G 102 294 - -
Vian11g00075 503 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Vian11g00075 503 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Vian11g00075 503 Pfam Signal peptide binding domain 314 432 IPR004125 GO:0006614|GO:0008312|GO:0048500
Vian11g00075 503 Gene3D - 5 297 IPR042101 -
Vian11g00075 503 SUPERFAMILY Signal peptide-binding domain 286 438 IPR036891 GO:0006614|GO:0008312|GO:0048500
Vian11g00075 503 Pfam SRP54-type protein, GTPase domain 102 295 IPR000897 GO:0005525|GO:0006614
Vian11g00075 503 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 482 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Vian11g00075 503 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00075 Vian-Chr11 683381 686712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00075 K03106 - gmx:100789217 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00075 11 683381 686712 Vian11g00075 11 683381 686712 ECH
Vian11g00075 11 683381 686712 Vian9g00085 9 702161 705038 PCT