Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01853 ATGGGTTTGGAAGTAGAAGAACCAATAACGACAGGACAATCCACAGCACCAGAAACGATGTCGTTGAGTTCACCGCAAAAAGTTCAAAACAACTTGACCGTTACATCCACGCTCCCAATCGTGCAGCCTCACGCGCTTCTCCCAAAGCCTGTGCCCCCAACCGCAGCACTCCGAAACGACGTCACCGTTTCCTCTGCATTTGGCAAGTTCTTTCACCAGCGCCGCCATGAGCTGTCGTCTGCAATCTCGCGAGGGATCTCCACTCTTAAGCACCAAACCGACGATGCTTTGAAGAAGAACAAGAACGAAGGCGTGACAGAGTTCAACCTCTCTGGACTGAAAATCTTTGTCGCGGTAAAAAAGAACGCACCGTTCTCACAGCGCCGCATCAGCTTCTTCTCGCGCTCAAACTGCAGAGAGTGCAGCGCAGTGCGGAGCTTCTTCAGAGAGAGAGCGCTGAGGTTCGTGGAGATAAATGTGGACGTGTTCACGGAACGGGATAAGGAATTGAGGGAGAGAACGGGGAGCACGACGGTGCCGAAGATTTTCTTTGGAGAAAAGCTGATAGGAGGGCTGGTGGAGCTCAACGCACTGCGGAAGGACGGCAACAAGGAGTTGGAGAGGCAATTGAAAGACGCAGAAGGAGAGGGGCCGGCGGCTCCGGTGTACGGGTTCGATGAAGCGGCGGAGGAAACAGTGAAGGAAGAAGCGGCTGAGGAGACTTTGAAGGTAGTTAAGGTTTTGAGGCAGAGGTTGCCAATTCAGGACAGGGTGTTGAAAATGAAGATTGCGAGGAACTGCTTTGCAGGGAGCGAGTTGGTGGAGTTTCTGGTTCGCCACCATGGCTACGCTCCTACCAAGGCTGTTGAGATTGGAAAACAGTTATGCAAGAAGCACTTCATCCATCATGTTTTCGGGGAAAATGATTTCGAGGAGGGAAACCACTTCTATAGATTCATTGAGCACGAACCCTTAATCTCCAAATGCTTTAACTTCCGTGGTGCCACGTATGATAGTGAACCGAAGGCTGCAGCTGCAGTGTGTGATAGGCTCACCAAGATTATGTGTGCTATTCTTGAGTCTTATGCTTCTGAAGACAGGAAACGTATTGATTATCTGGCCATTAGCAAAAGTGAAGAATTTCGTAGGTATGTAAACATGACCCAAGATCTGCAGCGGGTGAATCTATTGGAACTATCAGAAAACGAGACACTTGCCTTCTTCTTAAATTTGTACAATGCTATGATCATCCATGCTGTCATTAGAGTCGGGTGTCCTGAAGGTGTGATTAATAGGAGATCCTTCTCTGAGTTCCATTACTTGATTGGAGGGCATCCTTATTCTCTTAGTGCTATTAAAAATGGAATCCTCAGAAGCAATCGGAGGTCACCATACTCCTTAATCAAGCCCTTTGGCTCAGGAGACAGGCGCTTAGAGTTCCCAGTCAATTCATTCCTTTCTCATACCAATAATGATTCACTTGTTCCTACCAAAATGCAGCTTGCTCTTGTAAAAATGAATCCGTTAGTTCACTTTGGCCTTTGTAATGGCACGAAGTCGAGCCCAAAGAAGGAGCATCTAGATGACCGACCAACGATTGAATCCACGAGTTTCTACTTGGATGCTGGAAACAACAACAATCTCAACACACTTGCCAAGGCAAATGCATTTCCGTACGGCATTGACTTCAATAATTGTTCCACAGGAAGGTTTAGCAATGGCAAAACCCTTGCTGACCTTATTGCTATTAGACTGAGTTTGCCAATGCCACCTCCGTACTTAGGTGTGCCCAAGTCTAAGAGACATCAAGTAATAAGAGGGATTAACTATGCATCAGGCTCTTGTGGAATCTTGAATTCAACTAGAACAAGAATTTATGATCTTGGAGCTCGAAAGTTTGTAAAGGAAACCTTGTGCAAATCGGAATGA 1929 0.4697 MGLEVEEPITTGQSTAPETMSLSSPQKVQNNLTVTSTLPIVQPHALLPKPVPPTAALRNDVTVSSAFGKFFHQRRHELSSAISRGISTLKHQTDDALKKNKNEGVTEFNLSGLKIFVAVKKNAPFSQRRISFFSRSNCRECSAVRSFFRERALRFVEINVDVFTERDKELRERTGSTTVPKIFFGEKLIGGLVELNALRKDGNKELERQLKDAEGEGPAAPVYGFDEAAEETVKEEAAEETLKVVKVLRQRLPIQDRVLKMKIARNCFAGSELVEFLVRHHGYAPTKAVEIGKQLCKKHFIHHVFGENDFEEGNHFYRFIEHEPLISKCFNFRGATYDSEPKAAAAVCDRLTKIMCAILESYASEDRKRIDYLAISKSEEFRRYVNMTQDLQRVNLLELSENETLAFFLNLYNAMIIHAVIRVGCPEGVINRRSFSEFHYLIGGHPYSLSAIKNGILRSNRRSPYSLIKPFGSGDRRLEFPVNSFLSHTNNDSLVPTKMQLALVKMNPLVHFGLCNGTKSSPKKEHLDDRPTIESTSFYLDAGNNNNLNTLAKANAFPYGIDFNNCSTGRFSNGKTLADLIAIRLSLPMPPPYLGVPKSKRHQVIRGINYASGSCGILNSTRTRIYDLGARKFVKETLCKSE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01853 642 CDD DEP 240 318 - -
Vian10g01853 642 Gene3D Glutaredoxin 123 214 - -
Vian10g01853 642 Pfam Protein of unknown function, DUF547 398 523 IPR006869 -
Vian10g01853 642 Pfam Glutaredoxin 132 189 IPR002109 -
Vian10g01853 642 SUPERFAMILY "Winged helix" DNA-binding domain 240 334 IPR036390 -
Vian10g01853 642 PRINTS Glutaredoxin signature 130 148 IPR014025 -
Vian10g01853 642 PRINTS Glutaredoxin signature 172 185 IPR014025 -
Vian10g01853 642 PRINTS Glutaredoxin signature 186 199 IPR014025 -
Vian10g01853 642 ProSiteProfiles DEP domain profile. 248 321 IPR000591 GO:0035556
Vian10g01853 642 MobiDBLite consensus disorder prediction 1 24 - -
Vian10g01853 642 ProSiteProfiles Glutaredoxin domain profile. 118 217 - -
Vian10g01853 642 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 35 523 - -
Vian10g01853 642 Gene3D SGNH hydrolase 537 634 IPR036514 -
Vian10g01853 642 Coils Coil 196 216 - -
Vian10g01853 642 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 252 319 IPR000591 GO:0035556
Vian10g01853 642 Gene3D - 234 367 IPR036388 -
Vian10g01853 642 SMART DEP_3 248 321 IPR000591 GO:0035556
Vian10g01853 642 SUPERFAMILY Thioredoxin-like 124 203 IPR036249 -
Vian10g01853 642 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01853 Vian-Chr10 30431441 30439067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01853 540 631 Acyl Lipid Metabolism Gene Families AT4G10950 44.086 1.36e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01853 - - pvu:PHAVU_003G007200g 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01853 10 30431441 30439067 Vian10g01853 10 30431441 30439067 ECH