Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01427 ATGGTGAAGAAAACCAACCTGAAAAAACGAAAACAAGGTGCAAAGAACTCGATCCAGGCTCCTCCTTCATGCTCGTCAACGCTTTGGACGCTCCTCGACGCTCCTCCACACCACGGCGGCGACGCTCCTCCACACCATGGCGACAATAGAAGCTTTCAAACCAAAAGAAAAATTGGGAAGAAACAAAGAAAGGAATGGAAGCGGGGAGATGGGGAGGTGAAACGAAAATGGGGAAAGGGGAAGAGAGTTCTACATAGATTAGTTGCATGCCTTTCTCAGGACTTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGAGCATACTGTGACACAAGGCAGAGCTGCTGTTATCCTAAGACTGGGAAACCTGCTGCAGATTTCAGCATTCATGGACTTTGGCCTAACTACAATGATGGCTCCTGGCCCTCTAACTGTGACCCTGACAGTGTCTTTGATAAATCTCAGATCTCAGAGCTTATTAGCAGCATGGAGAAGGAGTGGCCATCCTTGAGCTGCCCAAGTAGCAATGGGATGAGGTTCTGGTCACACGAATGGGAAAAACATGGCACTTGTGCACAATCTGAGCTTGATCAAACTGAGTACTTTGAAGCAACTCTCAAACTCAAGAAAAAACTAAACCTCCTTAAGATCCTCAAGAATGCAGGGATTGAACCAGATGATGAATTTTACAGTCTAAATAGCATAACAAATGCCATAAAAGAGGGCACTGGGTTTACCCCTGGAATAGAGTGTAACAGAGATTCAGCTCGTAACAGTCAACTCTACCAAGTTTACATGTGTGTGGACACTTCTGGGTCAGATTTCATTGAGTGTCCTTTGCTTCCAAGGAGCAAATGTGGTGAACAAATTCAATTTCCCAAGTTTTAA 888 0.4505 MVKKTNLKKRKQGAKNSIQAPPSCSSTLWTLLDAPPHHGGDAPPHHGDNRSFQTKRKIGKKQRKEWKRGDGEVKRKWGKGKRVLHRLVACLSQDFDFFYFVQQWPGAYCDTRQSCCYPKTGKPAADFSIHGLWPNYNDGSWPSNCDPDSVFDKSQISELISSMEKEWPSLSCPSSNGMRFWSHEWEKHGTCAQSELDQTEYFEATLKLKKKLNLLKILKNAGIEPDDEFYSLNSITNAIKEGTGFTPGIECNRDSARNSQLYQVYMCVDTSGSDFIECPLLPRSKCGEQIQFPKF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01427 295 CDD RNase_T2_euk 95 286 IPR033697 -
Vian10g01427 295 Gene3D - 89 295 IPR036430 GO:0003723|GO:0033897
Vian10g01427 295 FunFam Ribonuclease 3 89 295 - -
Vian10g01427 295 MobiDBLite consensus disorder prediction 39 55 - -
Vian10g01427 295 MobiDBLite consensus disorder prediction 12 30 - -
Vian10g01427 295 SUPERFAMILY Ribonuclease Rh-like 89 294 IPR036430 GO:0003723|GO:0033897
Vian10g01427 295 ProSitePatterns Ribonuclease T2 family histidine active site 1. 127 134 IPR018188 GO:0003723|GO:0033897
Vian10g01427 295 PANTHER RIBONUCLEASE T2 92 287 IPR001568 GO:0003723|GO:0033897
Vian10g01427 295 Pfam Ribonuclease T2 family 95 278 IPR001568 GO:0003723|GO:0033897
Vian10g01427 295 ProSitePatterns Ribonuclease T2 family histidine active site 2. 180 191 IPR033130 -
Vian10g01427 295 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01427 Vian-Chr10 24404873 24411173 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01427 K01166 - gmx:100778239 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01427 10 24404873 24411173 Vian10g01427 10 24404873 24411173 ECH