Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01399 ATGTTGGACGGTCGTTCGTGCGTTGTTCCGAGGTTGTTTTCCAGCACTTGCCAGGCAGAGAACGACTGGTCTTACATGAAGTGCTTGCTGGAGTTGGACATCAAGAATGGAAAGCGCCCTATGGAGATTGATGATGTTGAGGATGAGCCCCAGCAGCCGAGGAAGTGTACCAGGAAGTTGGATTCTTACAATAGAGTTGAAATGGCTCGAATTTCCCTTCAAAGGCAATCTATTGAGGCCAATGATTCCGTTGTTTCCCAGATGGATCAGGAGGCCATTGAGCCATTGAACGTTTGTGAAGTAGTTGTCGGAGAAGATGGAGCTTTGACCGACCGGCTATTTGGTGAGCAAGAACAGGAGGGTGATGGTGATTTGATGGATGTTGGTGACCGTCAATCCGATGAACAGCAGCAGGCTAAGCCTGGGGATTTATCAGATTTTGGTGCCAGGCTATCTGAATATCGGTTGGAGGATGATGAGAATCTAATGAATTCAAGTGAACAGCAATCTGAGCAGCAGCAGCAGCAGCTTGGTGGGGATTCTTCAGATTCTGGTTCACTCTTGCCACGCATGAACCGTGACAGCTCAATAGCCTGTCTCAGCCGGTGTTCAAGGTCAGACTACGGTTCTCTAGCCTCGTTGACTAGGAGCTTCCGGAACATAATCCGAAGTGGTGAACTCTATCAATGGAGGAGACTAAATGGTATTATGGAGCACTGGATTTATTTTTCCTGCGCCCTCCTGGAATGGGAGGCCTATGATCCAATCCGTCAGAGGTGGATGCATTTGCCAAGGATGGCTTCTAATGAATGCTTTATGTGTTCAGACAAGGAATCTTTAGCTGTAGGAACTGAGCTACTTGTGTTTGGGAGGGAGCTAAGATCTCATGTGATTTACAGATACAGTCTGTTGACAAACTCATGGACATCTGGAATGAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGCCTTGGAGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTGGACTCTGCTGAATTATACAATTCTGAGACTCAAACATGGGAAACACTGCCAAGTATGAAGAAACCAAGGAAGATGTGTTCTGGGGTGTTTATGGATGGACATTTTTATGTTATAGGGGGGATTGGGGGGAGTGATTCTAAGGTCCTAACATGTGGAGAGGAGTACAATATTCAGAGCAGGACATGGACAGAGATTCCTAACATGTCCCCAGGAAGAAGTAGTAGGGGTCCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTGGTTGCAGTTGTAAATGATGAACTATATGCTGCTGATTACGCTGACATGGAGGTTAAGAAGTATGACAAGGAAGAAAAAGTGTGGATTACCATTGGGAGACTGCCAGAACGTGCAGTGTCGATGAATGGTTGGGGTCTTGCATTCAGGGCATGTGGAGATAAGCTTATTGTGATTGGTGGACCTAGGACTCATGGTGAGGGTTTTATTGAGCTCAATTCATGGGTGCCTAGTGCAGGGCCTCCACAGTGGGATCTACTTGCTAGGAAACGTTCTGGCAACTTTGTTTATAATTGTGCTGTGATGGGATGTTGA 1605 0.4685 MLDGRSCVVPRLFSSTCQAENDWSYMKCLLELDIKNGKRPMEIDDVEDEPQQPRKCTRKLDSYNRVEMARISLQRQSIEANDSVVSQMDQEAIEPLNVCEVVVGEDGALTDRLFGEQEQEGDGDLMDVGDRQSDEQQQAKPGDLSDFGARLSEYRLEDDENLMNSSEQQSEQQQQQLGGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLASLTRSFRNIIRSGELYQWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVIYRYSLLTNSWTSGMRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSETQTWETLPSMKKPRKMCSGVFMDGHFYVIGGIGGSDSKVLTCGEEYNIQSRTWTEIPNMSPGRSSRGPEMPATAEAPPLVAVVNDELYAADYADMEVKKYDKEEKVWITIGRLPERAVSMNGWGLAFRACGDKLIVIGGPRTHGEGFIELNSWVPSAGPPQWDLLARKRSGNFVYNCAVMGC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01399 534 FunFam F-box/kelch-repeat protein SKIP11 233 519 - -
Vian10g01399 534 Gene3D - 233 517 IPR015915 GO:0005515
Vian10g01399 534 MobiDBLite consensus disorder prediction 116 147 - -
Vian10g01399 534 MobiDBLite consensus disorder prediction 116 137 - -
Vian10g01399 534 MobiDBLite consensus disorder prediction 163 188 - -
Vian10g01399 534 MobiDBLite consensus disorder prediction 160 188 - -
Vian10g01399 534 Coils Coil 156 176 - -
Vian10g01399 534 SMART kelc_smart 285 328 IPR006652 GO:0005515
Vian10g01399 534 SMART kelc_smart 329 376 IPR006652 GO:0005515
Vian10g01399 534 SMART kelc_smart 377 437 IPR006652 GO:0005515
Vian10g01399 534 Pfam Kelch motif 317 362 IPR006652 GO:0005515
Vian10g01399 534 Pfam Kelch motif 365 412 IPR006652 GO:0005515
Vian10g01399 534 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 172 534 - -
Vian10g01399 534 SUPERFAMILY Kelch motif 247 530 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01399 Vian-Chr10 23885875 23887479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01399 194 410 EF-hand Containing Proteins AT4G39560 25.346 3.67e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01399 - - gmx:100818865 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01399 10 23885875 23887479 Vian10g01399 10 23885875 23887479 ECH