Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01386 ATGAATTTGCTTCCCCCACTTTCTGGCTTTGACTTTGTCGGTGAAAAGTTTCCAGCTTTTAACTTGGTGATGCATACAGGATTGTGGCTTGTGAGCATGTCGACTCCTGCAAGAAAGAGGCTCATGAGGGATTTTAAAAGAGTGCAACAAGATCCTCCAGCTGGCATCAGTGGGGCTCCCCATGAGAATAATATTATGCTTTGGAATGCAGTTATATTTGGACCAGACGACACCCCTTGGGATGGAGGAACATTTAAGTTAACACTTCAGTTCACAGAGGAATATCCTAATAAACCACCTGTGGTGCGCTTTGTTTCTCAAATGTTTCATCCAAACATTTATGCAGATGGAAGCATATGTTTGGACATTTTGCAAAATCAATGGAGTCCAATTTATGATGTAGCTGCAATACTTACCTCAATTCAGTCTTTGCTTTGTGATCCAAACCCAAACTCTCCAGCAAATTCAGAAGCTGCAAGGATGTTTAGTGAAAACAAACGTGATTACAACAGAAGAGTACGAGATATTGTTGAGCAGAGTTGGAGTGCTGATTAG 555 0.4126 MNLLPPLSGFDFVGEKFPAFNLVMHTGLWLVSMSTPARKRLMRDFKRVQQDPPAGISGAPHENNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEEYPNKPPVVRFVSQMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRDYNRRVRDIVEQSWSAD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01386 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 181 - -
Vian10g01386 184 FunFam Ubiquitin-conjugating enzyme E2 2 33 180 - -
Vian10g01386 184 SUPERFAMILY UBC-like 26 182 IPR016135 -
Vian10g01386 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 36 182 IPR000608 -
Vian10g01386 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 109 124 IPR023313 -
Vian10g01386 184 SMART ubc_7 39 182 - -
Vian10g01386 184 Gene3D Ubiquitin Conjugating Enzyme 31 180 IPR016135 -
Vian10g01386 184 CDD UBCc 39 177 IPR000608 -
Vian10g01386 184 Pfam Ubiquitin-conjugating enzyme 40 176 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01386 Vian-Chr10 23535220 23537414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01386 39 152 Miscellaneous Gene Families AT1G17280 31.092 5.06e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01386 K10573 - zof:122015033 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01386 10 23535220 23537414 Vian10g01386 10 23535220 23537414 ECH