Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01375 ATGTCTACCGTTGCATTAGAACCTCTATTCCAACTTTGCTCCAGAAAACCTTCGTTTCGTAGCCGTAAACCAATCTCACTGAGACCCTTCTTTCTTCCCACGTGCTCCTCCAATCTCAATGATGCATCCTTCATCTTCCACCACCAACCTCGTAGGACTCTCTCTCCCGTGCATGCAACTTCAGTTACAGACACCCCTACCCTCCACCCCCTTCAATGCCCTCAGACCATCACCAGCACTTTCACGATCGACCGAACCCACATGGTGAAGGGAAAGATTTTTGTGAGATTAGATCACGGAAGGGATTTGAATGATTGGGAGCTTACGGTGGGCTGCAGTCTACCTGGAAAATGGATTCTTCACTGGGGAGTTACCCTTGTTCAAGATGTTGGAAGGGAATGGGATCAACCTCCTCTTGATATGATAACCCCTGGATCTGTTCCTATAAAGGACTATGCAGTAGAGACCCCTTTGAAGAAGTCATCCTTATCCGCAGAAGGAGATACGCTTCATGAAGTCAGGATTGGCCTAAGAGCAAAATTTGGAATTTCAGCAATTCATTTTGTTCTCAAGGATGAGGAAACTGGAGATTGGTACAAAAACGAAAGTAGAGATTTCGTGGTTTCTTTGGTGGACTGCATTAAGGCGGATTCGGATATAATTGAACCTAAAAGAGGCTTAGATTTTTGGCCAGGGAATTTGGGGCAATTATCTAGAATGTTCTCCAAGTCAAAAGCTGACGAAAATAAAAGTAGTGAATCCAGAGTTCCAGAACGAGAAAACAATCAACCAGAAGGTTTCTATGAGGAAGTGTATGTAACAAAGAAGGTTTTAGTTAGTAACTCTATCAGTGTCTCCACCAAGAAATGCTTTGAGTCTGGGGCAGTTAAGGACATTTTATATTTTGAAACTGATCTACCTGGAGATGTTGTCCTTCACTGGGGAGTTTGTAGGGATGATTCAAGAAGGTGGGAAGTTCCACCTCCTCCTCATCCACCAGGAACAGTACCATTTAAAGACAGGGCTTTGAGAACTCAATTATTGCCTAGAAAAGATGGAAAAGGATCTTCAGCACAAATCACTCTAGAAGAAGAATTTTTAGGACTTGTTTTTGTTATTAAGCAAAATGAAAATACTTGGTTCAAGTACTCGGGAAATGACTTTTATGTTCCCCTCTCAAGTTCTAGCAACTTGCTTAATATTGGCAACAAAGAGGATCTGTCAGAAGGTGTGCAGATTGAAAAGCCCAGTCAGCAAAATTCTTTCTTTGCATTTACTGATACAGTAGCCTATGAAATAAGAAATTTGGTCACAGACAACTCCTCTGAGAAGAATCAAAAGAGAAAATCTAAAAAGGTGCAACTAAGCATTTTTGAAGAAATTGAAAGGCTGGCTGCTGAAGCCTATAATATATTCAGGAACTCCATTCCAGGTTTCTCTAGGCCAACTACAGCAGAACCGGAAGCAACTAATGTGGAACCTGAGAAAACTGTTGCGGTACCTGAGAAAACTGTTATGGAACCTGAGAAAACTGTTGTGGAAGCAACTAATGTTGCAGAGACACTGTCCCTGGAGTCAAAAATATGCTCAGCGACAGGCACAGGGTATGAAATATTATGCCAAGGGTTTAACTGGGAATCTCATGTATCTGGAAGATGGTACATGGAGCTTAAAGAAGTAGCTTCAGAACTAGCATCAATTGGTTTCACTGTGGTCTGGTTACCACCACCTACAGAGTCTGTTTCACCTGAAGGATACATGCCGAAGGATTTATATAATTTAAATTCCAGATATGGAAACATGGATGAACTCAAAGATTTGGTGAAAAAATTTCATGAAGTTGGGATCAAAGTTCTAGGAGATGCTGTTTTAAATCACCGCTGTGCACATTATCAGAATAAGAATGGTGTTTGGAACATATTTGGAGGCTGTCTTGACTGGGATGATAGTGCAGTTGTTTCGGACGATCCACATTTTCAGGGTAGGGGCAACACGAGTAGTGGAGATAGTTTTCACGCTGCTCCAAACATTGATCATTCACAGGAGTTTGTGAGAAAAGATCTCAAAGAATGGTTATGCTGGTTGAGGAAAGAAATTGGATATGATGGATGGAGGCTTGACTTTGTGAGAGGATTTTGGGGTGGTTATGTAAAGGACTACATAGAGGCAAGTGAACCTTATTTTTCTGTGGGAGAGTACTGGGATTCTCTCAGTTATACAAATGGTGAAACTGATCATAATCAAGATGCTCATAGGCAGAGGATAGTTGACTGGATCAATGCTACCAATGGTAACTCTAGTGCATTTGATGTTACAACAAAAGGGATTCTTCACACTGCACTGGAAAAATGTGAATATTGGAGATTGTCAGATGTGAAAGGAAAGCCTCCAGGTGTTATTGGATGGTGGCCTTCTCGTGCTGTTACCTTTACAGAGAATCATGACACTGGTTCTACTCAGGGTCATTGGAGATTTCCCAGTGGAAAAGAAATGATAGGATATGCTTACATTCTTACTCACCCAGGAACCCCATCAGTCTTTTATGACCACATTTTCTCTCACAACAAAACTGAAATAGCGAGTCTGATATCTCTCAGAAAGAGGAACGGGATCCACTGCAGGAGTACAATTCAAATTAGCAAAGCCGAAAGGGATGTTTATGCAGCCATCATTGACGAAAAAGTTGCTGTGAAGATCGGACCAGGACATTTTGATCCATCAAGTGGCTCCATGAAATGGTCATTAGCTATTAAGGGAAAATACTACGAAATTTGGGAAGCATCGCAACCATAG 2793 0.4157 MSTVALEPLFQLCSRKPSFRSRKPISLRPFFLPTCSSNLNDASFIFHHQPRRTLSPVHATSVTDTPTLHPLQCPQTITSTFTIDRTHMVKGKIFVRLDHGRDLNDWELTVGCSLPGKWILHWGVTLVQDVGREWDQPPLDMITPGSVPIKDYAVETPLKKSSLSAEGDTLHEVRIGLRAKFGISAIHFVLKDEETGDWYKNESRDFVVSLVDCIKADSDIIEPKRGLDFWPGNLGQLSRMFSKSKADENKSSESRVPERENNQPEGFYEEVYVTKKVLVSNSISVSTKKCFESGAVKDILYFETDLPGDVVLHWGVCRDDSRRWEVPPPPHPPGTVPFKDRALRTQLLPRKDGKGSSAQITLEEEFLGLVFVIKQNENTWFKYSGNDFYVPLSSSSNLLNIGNKEDLSEGVQIEKPSQQNSFFAFTDTVAYEIRNLVTDNSSEKNQKRKSKKVQLSIFEEIERLAAEAYNIFRNSIPGFSRPTTAEPEATNVEPEKTVAVPEKTVMEPEKTVVEATNVAETLSLESKICSATGTGYEILCQGFNWESHVSGRWYMELKEVASELASIGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNMDELKDLVKKFHEVGIKVLGDAVLNHRCAHYQNKNGVWNIFGGCLDWDDSAVVSDDPHFQGRGNTSSGDSFHAAPNIDHSQEFVRKDLKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYIEASEPYFSVGEYWDSLSYTNGETDHNQDAHRQRIVDWINATNGNSSAFDVTTKGILHTALEKCEYWRLSDVKGKPPGVIGWWPSRAVTFTENHDTGSTQGHWRFPSGKEMIGYAYILTHPGTPSVFYDHIFSHNKTEIASLISLRKRNGIHCRSTIQISKAERDVYAAIIDEKVAVKIGPGHFDPSSGSMKWSLAIKGKYYEIWEASQP 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01375 930 MobiDBLite consensus disorder prediction 242 263 - -
Vian10g01375 930 Gene3D Glycosidases 537 870 - -
Vian10g01375 930 PANTHER ALPHA-AMYLASE 516 929 - -
Vian10g01375 930 SMART aamy 537 866 IPR006047 GO:0005975
Vian10g01375 930 Gene3D - 871 927 IPR013780 -
Vian10g01375 930 SUPERFAMILY Glycosyl hydrolase domain 871 926 - -
Vian10g01375 930 MobiDBLite consensus disorder prediction 243 263 - -
Vian10g01375 930 CDD AmyAc_arch_bac_plant_AmyA 538 877 - -
Vian10g01375 930 Pfam Alpha-amylase C-terminal beta-sheet domain 868 926 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vian10g01375 930 Pfam Alpha amylase, catalytic domain 564 825 IPR006047 GO:0005975
Vian10g01375 930 SMART alpha-amyl_c2 867 927 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vian10g01375 930 SUPERFAMILY (Trans)glycosidases 535 856 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01375 Vian-Chr10 23294960 23301731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01375 57 928 Glycoside Hydrolase AT1G69830 60.364 0.0 1072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01375 K01176 - gmx:100810333 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01375 10 23294960 23301731 Vian10g01375 10 23294960 23301731 ECH