Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01340 ATGGGCTATCAGCTGGTACAGATAGTTACACTTCTGACAGTGATAGCATTTGGAGCATTAAGGAAAGTAAGAGGAGAATGTAGCTCAGATGATTTGGAAGGTTTGATGGCATTCAAGAATGGCATTCAGATGGATACATCTGGCCGGTTGGCAAAGTGGGTTGGTAGGAACTGCTGTGAATGGGAAGGTGTTGTCTGTGACAATGCAACCACCAGAGTGACACAGATCCTTCTCCCAGGCCTCAATGAAAAAGATTTTGTTCAAACACAAATGGTGGGCCAGCTTTCTCCTTCCATGACACTCCTCACCTCTCTTGAAATCCTTGATCTCGGAGGCTTAGTAGGCCTCAGTGGAGCAATTCCCCTAACAATTGGGTTGCAAATGCCAAAGCTCCAAAAGCTTTACCTTTATGGTAACAATTTAACTGGCCCAGTACCAGAAAGCATTGGTGGTTTTCCAAACCTCCAGGAACTGGCACTGCATGAAAATAGGATATCTGGGTCAATCCCTTCTAGCCTTGGAAGTTTAAGAAAACTCAAAAGGCTGCTGCTTTACTCAAACCAAATTTCAGGTACAATACCCTTCTCACTTGGGAGTTTGACCAATTTGGTAGAACTGGATGTTCATGACAATGCTCTTATGGGTCATATACCCAACAACATTGGTCAGATGCTGTCTTTAGAGAAGCTTGATCTTTCAAGCAATATGTTAAGTGGAAGCATACCTTCTTCAATAACCAATTTAACTGCCATTTCAGTTTTGTATTTTGACACCAACTATCTTGAGGGAACCATCCCATTTCCCTCAAGACCTGGTGAAATGCCTTCACTGAACTTCCTAAGACTCCACAATAACCACCTGAGTGGAAACATACCTCCCAGTTTTGGCTACCTGGTTTCCCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCATTGCCTTCTAATTTGGGCAATTTGCATTCTTTGACAGAGCTATACCTCAGTGACAACTCCTTCTCTGGCCAAATACCAAAATCAATAGGCCAGCTCTCTCAGCTCATAATGTTGAACATTTCCAACAATTTGATTCAATGGCCATTGCCTCAGGAGATGTCTTCCCTTCAAAACCTCCAGACACTTGATCTATCTTTCAACCCTTTGAGCCTCTCTTCCATTCCACCATGGCTTACAAGTATGTCATCTCTTTCCCGTCTTTACCTCGCAGCCTGTGGCATCAAAGGCCAAATTCCAGACTCATTGCAAACAACACAGAGTCCAATACAGGAACTGGATTTATCAGGGAACCTTCTCAGTGGACCAATACCATCATGGTTAGGATCCTTCAGTCAGCTCTACCTGTTAAACCTCTCAAGTAATTCACTTGAGTTACACATACCTGATTCCCTCACAAACTTGCCTGATCTTGCTGTTCTTGATCTTCACTCAAACAAGTTAACAGGCTCCATAACTGGAGTATTTAACACTGCTCAACAAGGTACTTCTGGGGGATCACTGACATACATTGATCTTTCTGATAACAACTTCTCAAGTGGAGTTGAGGCAATTGGTGTGGGAGAACAGTTAAACATTCAACATCTTAATTTGTCTCACAACCTTCTGAAGGGTACCTTGCCAGGTTCCCTTGGGAGGCTGAACTCCATTCACAGTTTGGATTTGAGCTTCAATGAATTAGCTTCCAACTTACCTGAAGTTCTGGCAAAGTTGACCTTGTTGGAGAGTCTGAAGCTGCAAAGTAATCACTTCAGTGGAAACATACCCAATGGATTTCTCAAGCTGAGAAAGCTGAAGGAATTGGACTTATCAGATAATGTACTTGAAGGGGAAATTCCAAAGGGTAAGCCTCTAATTGATTTTCCTGGGAGTACTTATTCTAGAAATAAAGGTTTGTGTGGAAAGCCTCTCAGTCCCTGTAAAGTTTGA 1929 0.4251 MGYQLVQIVTLLTVIAFGALRKVRGECSSDDLEGLMAFKNGIQMDTSGRLAKWVGRNCCEWEGVVCDNATTRVTQILLPGLNEKDFVQTQMVGQLSPSMTLLTSLEILDLGGLVGLSGAIPLTIGLQMPKLQKLYLYGNNLTGPVPESIGGFPNLQELALHENRISGSIPSSLGSLRKLKRLLLYSNQISGTIPFSLGSLTNLVELDVHDNALMGHIPNNIGQMLSLEKLDLSSNMLSGSIPSSITNLTAISVLYFDTNYLEGTIPFPSRPGEMPSLNFLRLHNNHLSGNIPPSFGYLVSLQRVSLSNNKLEGALPSNLGNLHSLTELYLSDNSFSGQIPKSIGQLSQLIMLNISNNLIQWPLPQEMSSLQNLQTLDLSFNPLSLSSIPPWLTSMSSLSRLYLAACGIKGQIPDSLQTTQSPIQELDLSGNLLSGPIPSWLGSFSQLYLLNLSSNSLELHIPDSLTNLPDLAVLDLHSNKLTGSITGVFNTAQQGTSGGSLTYIDLSDNNFSSGVEAIGVGEQLNIQHLNLSHNLLKGTLPGSLGRLNSIHSLDLSFNELASNLPEVLAKLTLLESLKLQSNHFSGNIPNGFLKLRKLKELDLSDNVLEGEIPKGKPLIDFPGSTYSRNKGLCGKPLSPCKV 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01340 642 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Vian10g01340 642 Pfam Leucine rich repeat 423 481 IPR001611 GO:0005515
Vian10g01340 642 Gene3D Ribonuclease Inhibitor 350 642 IPR032675 -
Vian10g01340 642 Pfam Leucine Rich Repeat 324 344 IPR001611 GO:0005515
Vian10g01340 642 Pfam Leucine Rich Repeat 372 389 IPR001611 GO:0005515
Vian10g01340 642 Pfam Leucine Rich Repeat 226 248 IPR001611 GO:0005515
Vian10g01340 642 Gene3D Ribonuclease Inhibitor 269 349 IPR032675 -
Vian10g01340 642 ProSiteProfiles Leucine-rich repeat profile. 372 392 IPR001611 GO:0005515
Vian10g01340 642 FunFam Leucine-rich repeat receptor protein kinase EMS1 195 268 - -
Vian10g01340 642 Gene3D Ribonuclease Inhibitor 201 268 IPR032675 -
Vian10g01340 642 FunFam Nuclear pore complex protein NUP107 28 194 - -
Vian10g01340 642 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 363 642 - -
Vian10g01340 642 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vian10g01340 642 FunFam Piriformospora indica-insensitive protein 2 269 362 - -
Vian10g01340 642 SUPERFAMILY L domain-like 220 616 - -
Vian10g01340 642 SMART LRR_typ_2 274 297 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 128 151 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 200 223 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 370 395 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 152 176 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 322 346 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 468 491 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 571 594 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 298 321 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 224 248 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 547 570 IPR003591 -
Vian10g01340 642 SMART LRR_typ_2 595 617 IPR003591 -
Vian10g01340 642 SUPERFAMILY L domain-like 26 312 - -
Vian10g01340 642 Gene3D Ribonuclease Inhibitor 28 196 IPR032675 -
Vian10g01340 642 PRINTS Leucine-rich repeat signature 370 383 - -
Vian10g01340 642 PRINTS Leucine-rich repeat signature 227 240 - -
Vian10g01340 642 SMART LRR_sd22_2 547 566 - -
Vian10g01340 642 SMART LRR_sd22_2 128 154 - -
Vian10g01340 642 SMART LRR_sd22_2 595 610 - -
Vian10g01340 642 SMART LRR_sd22_2 322 348 - -
Vian10g01340 642 SMART LRR_sd22_2 200 223 - -
Vian10g01340 642 SMART LRR_sd22_2 224 250 - -
Vian10g01340 642 SMART LRR_sd22_2 370 390 - -
Vian10g01340 642 PANTHER UNNAMED PRODUCT 87 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01340 Vian-Chr10 22773433 22775361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01340 4 642 Receptor kinase-like Gene Family AT4G08850 31.441 4.35e-82 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01340 - - gmx:100799647 1081.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01340 10 22773433 22775361 Vian10g01340 10 22773433 22775361 ECH
Vian10g01340 10 22773433 22775361 Vian10g01340 10 22773433 22775361 PCT