Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01323 ATGGCCACCAACACTCATTTCATCCTCACACTCCAACCACGTTACCCTTTTTCTCTTTCATCTTCTTCTTTCCCATTTCTTCCAACTAACACCGCTCTCTCTTTCTCTCACCTTCGCTTTGGATCTCTTCCTCTTTCCCTCAATTTCCGTGCCTCCTTCTCCTTTAAGTCCCCTACCTCAACCATTAGCGCATTCTCCGACGCCGAGGAGGACGAAGAAGAGGAAGAAGAAGACGAAGAAGACGAAGAAGAAGAAGATGAAGACGACGACGTTGCTGCCGACGACTACGACGACGTATCTGCTGATGCTTCCAAGGACGACGCTGGTGTGTTCGCTCGCCACGACGGATTCAAGTGGCAGAGAGTCGAGAAGCTCTGCAACGAAGTCAGGGAGTTCGGCGCGGATATCATCGACGTCGAAGAGCTGGCCTCCATCTACGATTTTCGTATCGACAAGTTTCAGCGGCAGGCGATACTGGCGTTTCTGAGAGGCTCCTCGGTAGTGGTTTCTGCTCCGACGAGCAGCGGGAAGACGCTGATTGCGGAAGCGGCAGCGGTGGCTACGGTTGCTAGGGGACGGCGAATATTCTACACGACGCCGCTCAAGGCGTTGTCCAATCAGAAGTTTCGGGAATTCCGTGAGACTTTTGGTGACAGTAATGTTGGCCTTCTTACGGGTGATTCTGCTGTGAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGTGTTGGCAATGTTTCTTCTAGAAGTGGACTTGTAAATGTTGATGTGATTGTTTTGGATGAAGTTCATTATCTTAGTGACATATCTCGCGGTACAGTCTGGGAGGAGATTGTTATTTATTGCCCAAAAGTAGTTCAACTAATTTGCCTGTCAGCAACTGTTGCAAATCCAGATGAGTTGGCTGGCTGGATTGGTCAGATTCATGGTAAAACTGAATTGGTAACATCCTCAAAACGCCCAGTTCCATTGACATGGCATTTCTCTATGAAGAATTCCTTATTTCCACTTCTTGATGAGAAAGGAATGCAAATGAACAGGAAGCTGTCATTCAATTATTTACAACTTCAAGCTGCAGGAGCTAAACCTTACAAAGATGATTGGTCTAGAAAGAGGAACTCTCGGAAAAGGGGAACACGCTTTAGCTATGATAGTGATGATAGCATGTTTGAACAACGTTCTCTTTCAAAGAATGACATAAATGCCATACGTCGATCTCAAGTTCCTCAAGTAATTGATACATTATGGCAACTTCAGTCCAGGGATATGCTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATATCTTGAAAGTTGCAAACTTTTAGATGAGTGTGAATCAAGTGAGGTTGAACTAGCCTTGAAGAAGTTCCGCAAGCTGTATCCTGATGCTGTCAGAGAATCAGCTGTAAGAGGACTTTTGCAAGGGGTTGCCGCACATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAGTTGTTTCAAAGAGGACTTGTTAAAGTTGTTTTTGCTACAGAAACCCTGGCTGCTGGAATCAATATGCCTGCCAGAACAGCTGTTATTTCATCTCTCAGCAAAAGGGGTGACAGTGGGCGTATAGCATTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAGAGTGGTCATGTAGTTCTCATCCAAACTACTGACGAAGGAGCTGAGGAGGGCTGCAAAGTTCTGTTTGCTGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGGATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCAGTGGTCAAATGAATCAGGTAACATGAAACCTTCCACGGGAAGAACTTTGGAAGAAGCTAGGAAATTAGTTGAGCAAAGTTTTGGGAATTATGTTAGTAGCAATGTAATGCTGGCTGCTAAAGAAGAACTTAATAAAATTGAGAAAGAAATTGAGTTGCTGATGTCAGAAACTACTGATGAAGCTATTGATGGAAAAACCAGGAAGGCCTTAGCACCACGGCAATACAAGGAAATTGCAGAATTATTGGAAGATTTAAGATCAGAAAAGCGGGTTCGGACTAAGTTGCGTAAACAGATGGAAGCAAAGAGAATGTCTGCCCTGAAACCTTTGTTGGAGGAGACTGAAAGTGGACATTTGCCATTTTTATGCTTGCAGTATAGAGATGCTGAAGGAGTTGAACATTCAATTCCTGCTGTATTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAACTATGATTTCTTCTGTTGATTCTTTTGCATTGAATTTAGCAGAAGCAGAGCCAAGTGTTGCAGATTCTGCACTGAATAAAGATATTAAACCTTCATACCATGTGGCTCTTGGTTCAGATAACACTTGGTATCTTTTTACAGAAAAGTGGATTAAGACAGTATATGGGACAGGCTTTCCTAATGTTCCATTGGGTCAAGGGGATGCTCGACCTCGAGAAATTATGAGCACCCTACTTGATAACGGTGATATGAATTGGGATAAGCTTTCTCAATCCGAGCATGGTGGTTTATGGTTCATGGAAGGATCTCTTGATACATGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTGGCGGAAAATGACGAGCTACTACTAAAGTCTCAAGATTACAAAGATGCCATTGAAGGTTACAAAGAACAAAGAAATAAAGTTGCACGGTTGAAGAAAAAGATATCTCGTAGTGAAGGCTATAAAGAATATTTTAAAATTATAGGCGCAGTCAAGTTTGTTGAGGAGAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTGATTAATAGGATTGAACAGATTGAACCCTCAGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATTCATGAAATCAGAGCTTTAGATATCAATACACATGTCATATTTCCACTTGGTGAAACCGCTGGTGCAATTCGAGGAGAAAATGAGCTATGGCTTGCGATGGTTCTTCGCAATAAAATTTTATTAGATCTAAAACCTGCGCAGCTCGCTGCAGTGTGCGCAAGTTTGGTGTCCGTGGGGATCAAAGTTCGACCCTGGAAAAATAACAGTTACATTTATGAGCCTTCTGCAACTGTAACAAAATTCATAACATTATTAGATGAACAAAGAAATGCCTTATTGGCATTGCAGGACAAACATGGGGTGACAATCTCTTGCTGTTTGGATAACCAGTTTTGCGGCATGGTTGAGGCCTGGGCTTCTGGGTTGACATGGAGAGAAATAATGATGGACTGTGCAATGGATGATGGTGATTTAGCTCGTCTCCTTCGCCGGACCATTGATCTGTTAGTTCAGATTCCAAAGTTGCCAGATATTGATCCATTGTTGCAGCGCAATGCAAAGGCTGCTTCTGCTGTCATGGACCGGCCTCCAATAAGTGAACTTGTGGGGTAA 3501 0.4336 MATNTHFILTLQPRYPFSLSSSSFPFLPTNTALSFSHLRFGSLPLSLNFRASFSFKSPTSTISAFSDAEEDEEEEEEDEEDEEEEDEDDDVAADDYDDVSADASKDDAGVFARHDGFKWQRVEKLCNEVREFGADIIDVEELASIYDFRIDKFQRQAILAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKVVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSMKNSLFPLLDEKGMQMNRKLSFNYLQLQAAGAKPYKDDWSRKRNSRKRGTRFSYDSDDSMFEQRSLSKNDINAIRRSQVPQVIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYLESCKLLDECESSEVELALKKFRKLYPDAVRESAVRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRIALSSNELLQMAGRAGRRGIDESGHVVLIQTTDEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIQWSNESGNMKPSTGRTLEEARKLVEQSFGNYVSSNVMLAAKEELNKIEKEIELLMSETTDEAIDGKTRKALAPRQYKEIAELLEDLRSEKRVRTKLRKQMEAKRMSALKPLLEETESGHLPFLCLQYRDAEGVEHSIPAVFLGKVDSLNASKLKTMISSVDSFALNLAEAEPSVADSALNKDIKPSYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLGQGDARPREIMSTLLDNGDMNWDKLSQSEHGGLWFMEGSLDTWSWSLNVPVLSSLAENDELLLKSQDYKDAIEGYKEQRNKVARLKKKISRSEGYKEYFKIIGAVKFVEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHVIFPLGETAGAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSVGIKVRPWKNNSYIYEPSATVTKFITLLDEQRNALLALQDKHGVTISCCLDNQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLQRNAKAASAVMDRPPISELVG 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01323 1166 Gene3D - 111 329 IPR027417 -
Vian10g01323 1166 FunFam ATP-dependent RNA helicase 114 329 - -
Vian10g01323 1166 MobiDBLite consensus disorder prediction 61 92 - -
Vian10g01323 1166 Coils Coil 700 720 - -
Vian10g01323 1166 CDD SF2_C_Ski2 413 581 - -
Vian10g01323 1166 Gene3D - 330 598 IPR027417 -
Vian10g01323 1166 SMART DSHCT_2 991 1165 IPR012961 -
Vian10g01323 1166 MobiDBLite consensus disorder prediction 66 92 - -
Vian10g01323 1166 Pfam DEAD/DEAH box helicase 153 305 IPR011545 GO:0003676|GO:0005524
Vian10g01323 1166 Coils Coil 658 678 - -
Vian10g01323 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 322 IPR014001 -
Vian10g01323 1166 Coils Coil 62 89 - -
Vian10g01323 1166 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 948 1158 - -
Vian10g01323 1166 Coils Coil 944 964 - -
Vian10g01323 1166 Gene3D - 945 1158 - -
Vian10g01323 1166 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 61 1161 - -
Vian10g01323 1166 SMART ultradead3 146 336 IPR014001 -
Vian10g01323 1166 SMART helicmild6 483 569 IPR001650 -
Vian10g01323 1166 Coils Coil 897 927 - -
Vian10g01323 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 615 IPR001650 -
Vian10g01323 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 583 IPR027417 -
Vian10g01323 1166 Pfam DSHCT (NUC185) domain 995 1161 IPR012961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01323 Vian-Chr10 22471952 22478685 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01323 K26077 - gmx:100780908 1965.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01323 10 22471952 22478685 Vian10g01323 10 22471952 22478685 ECH