Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01314 ATGAACATTCTCCAACAACAACGTTGTTTCAACTTTCTTCTAACAACGTTCGTAGTAGTTTTTCTCAGCACAACACTTTCACCAGTCTCGGCTCGTTTATTCCCCAACGCGTCCTCAATCCCAGAGTGGAACTCCTCCCACGTGCCCCCAGCCGGCGCGTGGAACGCGTATCTCAACTTCACCGGATGCAGTCGGGGGAAAGCCTACGACGGCCTTTCCAATCTCAAAAACTACTTCCATTACTTCGGCTACATACCCACCGCGCCGCCGTCCAACTTCACCGACGACTTCGATGATGAGCTCGAAGAAGCCATCAAAACCTACCAGAAAAATTTCAACCTCAACATCACAGGCGAGCTGGATGACGCTACGATGCAGCAAATCGTGCGCCCGAGGTGTGGCGTGGCCGATGTGATCAACGGTACCACGACAATGAACTCCGGTAAGTCGAACACCACGTCCACGCCGAAGTTCCACACAGTGGCGCACTATTCGTTCTTTGATGGCATGCCACGGTGGCCGGAGGGTACAGAAGAACTAACCTACGCTTTTGACCCTGACAACGGCCTTGATGACACTGTGAAGGGCGTTTTCAGTAACGCGTTTAAGAGATGGGCAGAGGTTACCACAATCTCGTTCAGGGAAGCGTCGTCGTATGCGGTTGCGGATATCAGGATAGGATTTTACAGTGGTGAACACGGGGATGGCGAACCATTCGACGGAGTGTTGGGGACGTTGGCGCACGCTTTCTCGCCGACGAACGGGATGTTCCACCTCGACCAGGAGGAGGACTGGGTGGCCACCGGCGACGTCACCCAGGCCTCCGTGTCGAACGCCGTGGACCTGGAATCCGTGGCGGTGCACGAGATAGGCCATTTGCTCGGCCTCGGACACTCCTCAGTCGAAGAAGCCATCATGTACCCTACGATTTCGGCGAAAACGAGAAAGGTCGAACTCGCCGACGATGATATTAAAGGGATTCAAGTTCTCTACGGTTCCAATCCTAACTACACCGGCACACCCTCTACTTCGCGCGAGAACGATTCCAGCGACGGTGTTCCTCACGTGCAGGCCACGTGGAGCGTGCTTTTCTCCTGTATCTTCCTCTTCCTAGGATTTGTATTGCTCGTGTGA 1134 0.5414 MNILQQQRCFNFLLTTFVVVFLSTTLSPVSARLFPNASSIPEWNSSHVPPAGAWNAYLNFTGCSRGKAYDGLSNLKNYFHYFGYIPTAPPSNFTDDFDDELEEAIKTYQKNFNLNITGELDDATMQQIVRPRCGVADVINGTTTMNSGKSNTTSTPKFHTVAHYSFFDGMPRWPEGTEELTYAFDPDNGLDDTVKGVFSNAFKRWAEVTTISFREASSYAVADIRIGFYSGEHGDGEPFDGVLGTLAHAFSPTNGMFHLDQEEDWVATGDVTQASVSNAVDLESVAVHEIGHLLGLGHSSVEEAIMYPTISAKTRKVELADDDIKGIQVLYGSNPNYTGTPSTSRENDSSDGVPHVQATWSVLFSCIFLFLGFVLLV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01314 377 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 167 336 - -
Vian10g01314 377 PANTHER MATRIX METALLOPROTEINASE 52 353 - -
Vian10g01314 377 Gene3D Collagenase (Catalytic Domain) 61 338 IPR024079 GO:0008237
Vian10g01314 377 Pfam Putative peptidoglycan binding domain 72 127 IPR002477 -
Vian10g01314 377 SMART col_5 169 333 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vian10g01314 377 CDD ZnMc_MMP 172 332 IPR033739 GO:0008237|GO:0008270
Vian10g01314 377 SUPERFAMILY PGBD-like 63 138 IPR036365 -
Vian10g01314 377 PRINTS Matrixin signature 198 213 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian10g01314 377 PRINTS Matrixin signature 128 141 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian10g01314 377 PRINTS Matrixin signature 285 310 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian10g01314 377 PRINTS Matrixin signature 222 250 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian10g01314 377 PRINTS Matrixin signature 319 332 IPR021190 GO:0004222|GO:0006508|GO:0008270
Vian10g01314 377 FunFam Metalloendoproteinase 1 62 337 - -
Vian10g01314 377 Pfam Matrixin 177 332 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01314 Vian-Chr10 22327316 22328449 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01314 - - gmx:100781471 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01314 10 22327316 22328449 Vian10g01314 10 22327316 22328449 ECH