Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01306 ATGTGTTTCTCACTCCCTTCACCCGCTAGGTCCGCAGAGGGGCCAATGGAGGTTTCTCCCGCTACTAATTTCGTTTCCGAAACTCTATGTCCCCCTGAATCGGTCGGCGATTGTTGCGATCATTCTGGTCGGTTATCGGCCGTCGGAGAATCTACTCTTCCGGTGGGTTACGGTGTTTGCGGCGAGGACGCTGCGCAAGAGAATTGTAATACGGACACGCAGTTCCGGCAGCTCAACAACGATTCGACTCTGCTGTTGACTTCTTGTTCACCCGTCTCGGCGGTGGCGCCGGAATCGTGGGTTACTACCCAAGGGAACTGGCTCTTAGATGAGAACGAGGGTTCAATGGGTGCAGAATCTGTCTTTGCAATTGGGCCTTCTAACATGGGAGCAGGACTTTCGAATCTCGGCAATACGTGTTTTCTCAATGCTATACTGCAATGCTTTACACATACAGTGCCTCTAGTTCAGGGTATTCGTGCGTGTACTCATAATTTCCCCTGCCCTGGTCACATGGATCGCTTCTGTGTTATATGCACTTTTCGTGACCAGGTTGAACGTTCCTTGTCCGCATGTGGACGGACTCTCTCACCTTTGAAATTCGTGAACAATTTAAGTTTTTTTTCTTCTGGATTTAGAAGATATCAGCAGGAGGATGCCCATGAATTCATGCAGTGTGCTTTAGATAAACTGGAAAGGTGTTTCCTAGATTTGAAGAAGACCGATTTAAATTTTGAAGATGATAATCTTGTACAGAAAGTATTTGGTGGTCGTCTCATAAGCAAACTTCAATGTTGTAGCTGTGGTTGCACTTCTGACACTTATGAGCCGTTAATTGACATGAGTTTAGAGATAGAAAGTGTAGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAAGATTGACGCAAATTTTAGATGTGATAGCTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATTTGACACCATCAATTGCAGCATTTCATTTAAAAAGATTTAAGACCGATGGGATTCTTGTTGAGAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAACCATACACCATTTCTAATCAAAACAATGATGTACTGATGAAATATGATTTATATGCCATTGTTGTGCATACTGGATTTTCTTCTACTTCAGGGCATTACTTCTGCTTTATTCGCTCTGGTCCAGACACATGGCACAAGTTGGATGATTCAATGGTTACTGAGGTATCGGGAGACTCTGTACGGTCTCAGGAAGCATACATACTGTTTTATGCAAGACAGGGTACTCCATGGTTTTCTAGTATCATGGAATCTCAAAAGCAATGTTTGGATCCAAATATTTCAAGTACATCTCCTACGTCTGTTTTAGACGTTGGTGATGACATGGCTAAATCTAATCCCAGTTTTGTTCCAAGTACTGAAGAAGGTGGGGCTGGTGTATCCAAAGGATGTTCTGATCCTCCGTTTGATTATTTTTGTTCAGACAGACTTGCTTTTTCTGAAACAAATGACACTAAAGATGCTACTCATGGCTGTGGACAACTTCTCTACGGGTCAAATCAGGAGAGCATTTCTTTCCATAGCAGCTCTAAAGATGTTGAAACCCAAAAGTTTTCCAGGAACAGGGTGACCTTGGATGGTCGTTCCATGATTGATGGAAAATCTTATACGGAGAATGCTAGTCTTGATAATAACTATGATTGTGAGGAAGTTGTTGATTTAAGAGAGAGTGCTTGTTCACTATCTCTGCCTTCGCCTCCGCCCACCTCCCCTCTTGATGATGCTTCAGATAAATTTCGTGTCTTACGTGATAAATCGAAGGAGAGTAAGCAGAGCCGTAGAAGACCACTCAATCAGTGTAACAAGGATCCTGAACGACAAGAAGCTGTGAAATATCTGAACAAGACTGGTTCAAGGAGAGGGGAACTTTTGAAATATGTTCAAGATGGAGCTTCAAACAAGAGAAAAAAAGTGGATTCATTGCAGTGTAAGAAAACCACCTCTCTTGATCGCAAAAAATCAAACCAAACATCTGTCAGCCGCCCTGTGGCAGCTGGAATTTCACAGTGA 2094 0.4293 MCFSLPSPARSAEGPMEVSPATNFVSETLCPPESVGDCCDHSGRLSAVGESTLPVGYGVCGEDAAQENCNTDTQFRQLNNDSTLLLTSCSPVSAVAPESWVTTQGNWLLDENEGSMGAESVFAIGPSNMGAGLSNLGNTCFLNAILQCFTHTVPLVQGIRACTHNFPCPGHMDRFCVICTFRDQVERSLSACGRTLSPLKFVNNLSFFSSGFRRYQQEDAHEFMQCALDKLERCFLDLKKTDLNFEDDNLVQKVFGGRLISKLQCCSCGCTSDTYEPLIDMSLEIESVDSLPSALESFTKVEKIDANFRCDSCKEEVSMEKQLMLDLTPSIAAFHLKRFKTDGILVEKIDKHIDFPLELDLQPYTISNQNNDVLMKYDLYAIVVHTGFSSTSGHYFCFIRSGPDTWHKLDDSMVTEVSGDSVRSQEAYILFYARQGTPWFSSIMESQKQCLDPNISSTSPTSVLDVGDDMAKSNPSFVPSTEEGGAGVSKGCSDPPFDYFCSDRLAFSETNDTKDATHGCGQLLYGSNQESISFHSSSKDVETQKFSRNRVTLDGRSMIDGKSYTENASLDNNYDCEEVVDLRESACSLSLPSPPPTSPLDDASDKFRVLRDKSKESKQSRRRPLNQCNKDPERQEAVKYLNKTGSRRGELLKYVQDGASNKRKKVDSLQCKKTTSLDRKKSNQTSVSRPVAAGISQ 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01306 697 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 83 435 - -
Vian10g01306 697 MobiDBLite consensus disorder prediction 657 679 - -
Vian10g01306 697 MobiDBLite consensus disorder prediction 587 606 - -
Vian10g01306 697 MobiDBLite consensus disorder prediction 654 697 - -
Vian10g01306 697 FunFam Ubiquitin carboxyl-terminal hydrolase 20 127 438 - -
Vian10g01306 697 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 132 147 IPR018200 GO:0004843|GO:0006511
Vian10g01306 697 MobiDBLite consensus disorder prediction 680 697 - -
Vian10g01306 697 MobiDBLite consensus disorder prediction 611 633 - -
Vian10g01306 697 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 377 395 IPR018200 GO:0004843|GO:0006511
Vian10g01306 697 SUPERFAMILY Cysteine proteinases 129 434 IPR038765 -
Vian10g01306 697 Pfam Ubiquitin carboxyl-terminal hydrolase 132 432 IPR001394 GO:0004843|GO:0016579
Vian10g01306 697 Gene3D Cysteine proteinases 127 443 - -
Vian10g01306 697 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 131 435 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01306 Vian-Chr10 22185711 22189216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01306 132 434 Miscellaneous Gene Families AT2G24640 34.505 1.51e-50 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01306 K11855 - gmx:100808015 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01306 10 22185711 22189216 Vian10g01306 10 22185711 22189216 ECH