Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01198 ATGAAGAGAAACAAAAGGTTTTCCTCACTCTTTTTCATCTCCTTGTTGGTGATTGTCTTTGTCACCTTCTCTACAGTTTCTGTGGAAGCAAGGAAGACTAAGAAAAATCTTCACAAACGTCATAAAGATAGTCACAGTGGCAATGGCCACGGTCGACGGTCACATTCTCTATGTCCAACACCAACCCCTCCGCCTTATTATGGTCCTCAAGGGAGCATGTTTGATGTTTTGTCTTTTGGTGCCAAGGGTAATGGAGTTTCTGATGATTCAGAGGCACTTGTAGCTGCATGGAAAGGTGCATGTAAAGTTGCTGGTGCTACAGTTAAAATTCCAGCACAACGCAAGTTCCTCATCAAACCTGTTACTTTACAAGGCCCTTGTATGCCTTACCTTACTCTTCAGATCGATGGAACTCTATTGGCACCTGCTGAAGCATCTTCTTGGCCAACATCAAGTTTGTTTCAGTGGATAAATTTCAAGTGGGTACAGAACTTTACCATCAAAGGTTCTGGCACTATTGACGGCCAAGGCTATAACTGGTGGAGCTACTCAGAATTATATGACATACAGGCTATAAGATTTTACTCCAGCAACTCTGTCACAGTTCGTGATATCAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGGATTGAAGTTGACAACATTACAATATCCTCCCCAGAGAATAGCCCAAACACTGATGGCATTCACTTACAGAACACACAGGACGTGGAAATTCAACGTTCAATCATTGCAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAATTGTGGCCCCGGACATGGTATAAGTTTGGGAGGATTAGGGAAGGACAAGAGTGCAGCATGTGTGTCTGACATCATTGTTGAGGATATCTCTATGAAAAACACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCTTTGGTATGGTAAAAAATGTGTCATTTTCCAGAATTCAAGTGTACGATGTTATGTTTCCAATAATGATAGATCAATACTATTGTGACAAGCAAAAGTGCAAGAATCAGACAAGCACTGTGGTGATTTCTGGGGTGAAGTTTGATCAAATAAGTGGAACTTTTGGAATGCAGCCTGTTCATCTAGCTTGCAGCAATTCCATTCCATGCACAGATGTTGATTTAACCGACATTCAACTGAGTCCCTCCCCTAAATATAAAGGTTTGCAACAAGCTGTGTGCTGGAACACTTACGGAAAATCACAAGGGCCTTTGCTACCTTCAACCATTGATGATTGCTTGAAAAGTGGTGGTGGACTAATCAAGAGGATAGCAAGGTCACACGATAGACTTTGTTACTGA 1374 0.4185 MKRNKRFSSLFFISLLVIVFVTFSTVSVEARKTKKNLHKRHKDSHSGNGHGRRSHSLCPTPTPPPYYGPQGSMFDVLSFGAKGNGVSDDSEALVAAWKGACKVAGATVKIPAQRKFLIKPVTLQGPCMPYLTLQIDGTLLAPAEASSWPTSSLFQWINFKWVQNFTIKGSGTIDGQGYNWWSYSELYDIQAIRFYSSNSVTVRDIRIINSPLCHLKFDNSKGIEVDNITISSPENSPNTDGIHLQNTQDVEIQRSIIATGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSAACVSDIIVEDISMKNTLYGARIKTWQGGFGMVKNVSFSRIQVYDVMFPIMIDQYYCDKQKCKNQTSTVVISGVKFDQISGTFGMQPVHLACSNSIPCTDVDLTDIQLSPSPKYKGLQQAVCWNTYGKSQGPLLPSTIDDCLKSGGGLIKRIARSHDRLCY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01198 457 MobiDBLite consensus disorder prediction 33 48 - -
Vian10g01198 457 Pfam Glycosyl hydrolases family 28 106 412 IPR000743 GO:0004650|GO:0005975
Vian10g01198 457 FunFam polygalacturonase At1g48100 62 440 - -
Vian10g01198 457 SUPERFAMILY Pectin lyase-like 63 433 IPR011050 -
Vian10g01198 457 Gene3D - 67 439 IPR012334 -
Vian10g01198 457 PANTHER - 73 424 - -
Vian10g01198 457 MobiDBLite consensus disorder prediction 32 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01198 Vian-Chr10 19830462 19833064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01198 1 456 Glycoside Hydrolase AT3G26610 59.667 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01198 K01213 - gmx:100803027 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01198 10 19830462 19833064 Vian10g01198 10 19830462 19833064 ECH