Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01186 ATGGCGCGCAAGAAGATCAGAGAGTACGACTCCAAGAGGTTGTTGAAGGAGCACTTTAAGAGACTCTCTGGCAAGGAGTTGCCAATCAAGTCTGCACAAATAAATGCATCAACTGATTTCACTGAGTTACAAGAGAAGGAACCTTGGCTTTCATCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGAAAGCGTGGCAAAAGCGGTTTGGTTGCTTTGAATTTGGATTTTGCACAAGTCGTCTCATTTGTGAAAGAGCGTCTTGGAAAGGAGGTTGAGATGGGTGGATGCATAGGACCCATAACAACTTTCATTGTTGAACCTTTTGTCCCACATGACGAAGAGTTTTACCTTAACATAGTCTCTGAGAGACTCGGCAACAGCATAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAAGATAACTGGGATAAGGTTAAGACTGTATTCATTCCAACTGGAGTGTCTATTACATCTGAAATTGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAATTTCTTAGAGTGGTTTTCATTCTGTTTCAAGATCTGGATTTCACTTTCTTAGAGATGAATCCTTTCACATTGGTTAATGGAAAGCCTTATCCTTTGGATATGAGGGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAGACATTGAATTTCCACTGCCATTTGGAAGGGTTATGACTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTTTAAAATTCACTGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCCAGTGTCATCTACGCTGATACAGTTGGAGATCTTGGTTTTGCATCTGAGCTTGGAAACTATGCTGAATACAGTGGTGCACCCAAAGAAGATGAAGTCTTACAGTATGCCAGAGTTGTAATTGATTGTGCAACTGCAAACCCTGATGGCCAAAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCCAACTTTACTGATGTTGCTGCTACATTTAGCGGTATAATTCGGGCTCTGAGAGAGAAGGAGTCAAAATTGAAAGCAGCAAGGATGAACATCTATGTGAGGAGAGGAGGGCCCAACTACCAGAAGGGTCTAACTTTAATGCGTGCACTTGGAGAGGAGATTGGCATCCCCATTGAGGTTTATGGACCAGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAATTCATTACTGCTTCTGCTTAA 1272 0.4277 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQINASTDFTELQEKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMGGCIGPITTFIVEPFVPHDEEFYLNIVSERLGNSISFSECGGIEIEDNWDKVKTVFIPTGVSITSEIVAPLVATLPLEIKGEIEEFLRVVFILFQDLDFTFLEMNPFTLVNGKPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMTATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFASELGNYAEYSGAPKEDEVLQYARVVIDCATANPDGQKRALVIGGGIANFTDVAATFSGIIRALREKESKLKAARMNIYVRRGGPNYQKGLTLMRALGEEIGIPIEVYGPEATMTGICKEAIQFITASA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01186 423 SUPERFAMILY Succinyl-CoA synthetase domains 257 403 IPR016102 -
Vian10g01186 423 FunFam ATP-citrate synthase alpha chain protein 240 422 - -
Vian10g01186 423 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 4 236 - -
Vian10g01186 423 Gene3D - 240 422 IPR016102 -
Vian10g01186 423 FunFam ATP-citrate synthase alpha chain protein 1 233 - -
Vian10g01186 423 PANTHER SUCCINYL-COA SYNTHETASE BETA CHAIN 5 392 IPR005809 GO:0006099
Vian10g01186 423 Pfam ATP citrate lyase citrate-binding 241 417 IPR032263 -
Vian10g01186 423 Pfam ATP-grasp domain 6 203 IPR013650 -
Vian10g01186 423 Gene3D - 1 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01186 Vian-Chr10 19522462 19526094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01186 1 423 Acyl Lipid Metabolism Gene Families AT1G10670 87.943 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01186 K01648 - gmx:100818180 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01186 10 19522462 19526094 Vian10g01186 10 19522462 19526094 ECH