Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01179 ATGTTTGGAGGCAAAAATGGAAATCGCTTGCTTCCCGTTTTCTTGGATGAGACTCAATTTCGGCATCAAACTAATGCATCAAATCAGTTACAGTTGTTTGGAAACTTACAAGCTGGATGTAGTGTTGACCCAGTTAATTATTTCGGAAATGAGCATGTCAGCTCCATGATTCAGCCTAATAAACGCTGCAAGGAAATGGAAGATATGTCAAAACAAAGACTTCAGATTTCCTTAAATTACAATGTCAATCAAAAGGATGCTGATCGATTAGCAAGTATTCAAAATCCGAACCCTGTGTCAACAGGATTGAGGCTTTCATATGACCATGATGAACATAACTCATCTGTTACTTCTGCTAGTGGCAGCATGGCTGCCACACCGTCTATCATACTGTCTCTTGGTGATAATATCAGAACTGAGCTTGATAGGCAGCAAGAAGAGTTGGATCATTATATCAAACTTCAGAAGGAACAGTTGTCAAAGGGGGTGAGAGACATGAAGCAAAAACACATGACTGCTTTCATCTCCTCCATTGAGAAAGGTATTAGTGCAAAGCTAAAGGAAAAAGATGTGGAGATAGAAAACATGAACCGGAAAAACAGGGAGCTGGCAGAAAGAATAAAGCAGGTGGCTATTGAAGCACAGAGCTGGCATTACAGAGCAAAGTACAATGAGTCAGTTGTGAATGCATTAAGGAACAACCTACAGCAGGCAATTTCACAAGGTGCTGAACAAGGGAAGGAAGGGTTTGGAGATAGTGAAGTTGATGATGATGCCTCGTATATAGATCCTAATAACTTCCTAAACATACAGGGTGCGCCTATAAACTCTACTCACAAGAGGTACCAAGATGCAGAGAATCTGACTTGCAGAGCTTGCAAGGCAAAGGCAGTTTCTATGTTGTTGATGCCTTGTAGGCACCTGTGCTTGTGTAAGGATTGTGAGCAATTTATCAATGTTTGTCCCGTTTGCCAATTGATAAAAACTGCAAGTGTTGAGGTGTATCTGTCTTAA 1014 0.4083 MFGGKNGNRLLPVFLDETQFRHQTNASNQLQLFGNLQAGCSVDPVNYFGNEHVSSMIQPNKRCKEMEDMSKQRLQISLNYNVNQKDADRLASIQNPNPVSTGLRLSYDHDEHNSSVTSASGSMAATPSIILSLGDNIRTELDRQQEELDHYIKLQKEQLSKGVRDMKQKHMTAFISSIEKGISAKLKEKDVEIENMNRKNRELAERIKQVAIEAQSWHYRAKYNESVVNALRNNLQQAISQGAEQGKEGFGDSEVDDDASYIDPNNFLNIQGAPINSTHKRYQDAENLTCRACKAKAVSMLLMPCRHLCLCKDCEQFINVCPVCQLIKTASVEVYLS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01179 337 Pfam Zinc finger, C3HC4 type (RING finger) 287 325 - -
Vian10g01179 337 CDD mRING-HC-C3HC5_CGRF1-like 289 324 - -
Vian10g01179 337 PIRSF SBP1_RNase_bind 1 337 IPR017066 -
Vian10g01179 337 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 58 334 IPR017066 -
Vian10g01179 337 FunFam Baculoviral IAP repeat containing 7 299 335 - -
Vian10g01179 337 Gene3D Death Domain, Fas 158 298 IPR011029 -
Vian10g01179 337 Gene3D - 77 333 - -
Vian10g01179 337 ProSiteProfiles Zinc finger RING-type profile. 290 325 IPR001841 -
Vian10g01179 337 Coils Coil 186 213 - -
Vian10g01179 337 Gene3D - 89 157 - -
Vian10g01179 337 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 269 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01179 Vian-Chr10 19384937 19387558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01179 284 325 Miscellaneous Gene Families AT4G39050 40.476 1.00e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01179 K19042 - gmx:100791550 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01179 10 19384937 19387558 Vian10g01179 10 19384937 19387558 ECH