Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01172 ATGTACAAACAGTCTAATGAAGAACAGGGTGTAAGTAACAGGAAGGTTAGAAACTGTGATGCTGCAGAGAGCAGTTTTCAAAGCATGAATGTTGATGATGTGGATCCATCTGGGTGTTCATCATTCCAATTAAGAAATTTGAGTTGCTGCTCATTGGTTTGTAAACCAAGTGCTCCTAAGACAGCCAACAGACACTTCATGCTTCATAAAGTAACTCAGTCCTGGCCTTCCCCTGCCTTGAGTTTTGTGGAGAGAGTGCCCCAGGATGCACAAAGTTCTCATGTTACAGTTTTTAATTCAGGTGATGGATCCTCAAAAACAGATAACGAGTCAACCTCATCTAAGAGCATGCGGGATGTTCATATTTCAATGCGGTTGATGGAGGACTTTCTAGATCTTGCTAAAGAAAATACAGAAAAGGATTTGGAAACTTGTGGTATACTTGGTGCCTATCTTGAGAAGGGAACCCTCTATATGACTACTCTGATTATACCAAAGCAGGAATCTGCTTCCAATTCTTGTCAAGCTACGAATGAGGAGGAAGTTTTCAAAATTCTAAATGAAAGAACCCTTTATCCTGTAGGATGGATTCATACACATCCTTCTCAAAGTTGTTTCATGTCATCTGTGGATCTTCACACTCAATATTCCTACCAGATGATGATTCCTGAGGCATTTGCCATTGTCTTGGCACCAAATGATAAATTAAGGAGCTGTGGATTATTTCGTATAGCCGACCCTGAAGGAATGAATATTCTGAAAAATTGCCAGGAGACAGGATTTCATCCACACAAAGAACCAGATAATGGCAACCCTGTGTATGAGCACTGCTCCAATGTGTACAGAAACTCTAATCTAAGGTTTGAAATCTTTGATTTGCGATTAAATTGA 891 0.3996 MYKQSNEEQGVSNRKVRNCDAAESSFQSMNVDDVDPSGCSSFQLRNLSCCSLVCKPSAPKTANRHFMLHKVTQSWPSPALSFVERVPQDAQSSHVTVFNSGDGSSKTDNESTSSKSMRDVHISMRLMEDFLDLAKENTEKDLETCGILGAYLEKGTLYMTTLIIPKQESASNSCQATNEEEVFKILNERTLYPVGWIHTHPSQSCFMSSVDLHTQYSYQMMIPEAFAIVLAPNDKLRSCGLFRIADPEGMNILKNCQETGFHPHKEPDNGNPVYEHCSNVYRNSNLRFEIFDLRLN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01172 296 PANTHER AMSH-LIKE PROTEASE 40 294 - -
Vian10g01172 296 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 116 224 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian10g01172 296 FunFam AMSH-like ubiquitin thioesterase 2 100 295 - -
Vian10g01172 296 Gene3D Cytidine Deaminase, domain 2 97 295 - -
Vian10g01172 296 ProSiteProfiles MPN domain profile. 120 250 IPR037518 -
Vian10g01172 296 MobiDBLite consensus disorder prediction 93 117 - -
Vian10g01172 296 SMART pad1_6 119 247 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vian10g01172 296 SUPERFAMILY JAB1/MPN domain 120 249 - -
Vian10g01172 296 CDD MPN_AMSH_like 118 294 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01172 Vian-Chr10 19263589 19266753 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01172 K11866 - gmx:100807282 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01172 10 19263589 19266753 Vian10g01172 10 19263589 19266753 ECH