Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01170 ATGGCAGATTCAAAACCAGGATTGAGGAAGCCAGTGTTCACCAAGGTTGAACAGCTTCGCCCAGGAACAAGTGGGCACACTTTAACCGTGAAGGTGGTCAATGTTAAGATGGTGATGCAGAAAGGTCGCTCCGATGGTCCTCAATCCCGTCAAATGCGAATTGCTGAATGTTTGGTTGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATGATCAAGTGGATTTGGTGAAAGAGGGCTCTACTGTGATCCTTCGTAATGCGAAAATTGACATGTTCAAAGGATCAATGCGACTTGCTGTTGACAAGTGGGGCCGTGTTGAAGTCACAGATGCTGCTAGTTTCACTGTGAAGGAAGATAATAACTTGTCTCTTATTGAGTACGAACTGGTGAATGTTGTTGTGGAATAA 414 0.442 MADSKPGLRKPVFTKVEQLRPGTSGHTLTVKVVNVKMVMQKGRSDGPQSRQMRIAECLVGDETGMIIFTARNDQVDLVKEGSTVILRNAKIDMFKGSMRLAVDKWGRVEVTDAASFTVKEDNNLSLIEYELVNVVVE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01170 137 PANTHER OS05G0244600 PROTEIN 3 134 - -
Vian10g01170 137 CDD SoSSB_OBF 53 110 - -
Vian10g01170 137 Gene3D - 23 126 IPR012340 -
Vian10g01170 137 FunFam Uncharacterized protein At4g28440 23 126 - -
Vian10g01170 137 SUPERFAMILY Nucleic acid-binding proteins 7 135 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01170 Vian-Chr10 19238536 19241911 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01170 - - gmx:100526985 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01170 10 19238536 19241911 Vian10g01170 10 19238536 19241911 ECH