Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01168 ATGAACGAACAACTCACGCTGCTCTGTCTCTTTATCCTCTTCTCGTCTCTCAGTGTTAGCTTCGCCGGGGCCGCCGACGGAGAGAAAAATCCGTTCACGCCCAAAGCCTACGCGATTCGCTATTGGGACAAAGAGATCCGCAGCACGCTTCCCAAGCCTCCGTTTCTTTTGTCCAAGGCGTCGCCGCTGAGTGCGGCGGAGTCGGCGGCGTTCGTGAAACTCGCGGCTCAGAACGCACTTGACCAGAGGCTTCCGGAATTCTGCGCCTCCGCGAAGCTTCTCTGTTTTCCGGAGGTGGGGTCGAGCTTTGAGAAGCACGACAAGGACGCGAACTTCGCTGTGTACAGAGACAAGAACTTCACCAACTACGGAACGGGTCGACCCGGTGGAGTGGATTCGTTCAAGAACTACTCAGAAGGGGAGAATGTTCCGGTGAATGATTTCCGGCGCTACAGCAGGGACTCCGCCGGGCACAAGGACAGTTTTTTGAGCTACAGCACCGAGGGGAACGTGGTGCAGCAGAGCTTTCACACTTACGCCGCTGGAGCCACAGGCGGAGCCGGCGATTTCAAGCACTACTCTGAGGAGACCAACGTCCCGAACCTCGATTTCACCTCCTACTCCGACGACGCCAACGGGAGAACCCAGTCGTTCACTTCTTACTCTGAAAACGGCAATGCCGGAGAACAATCGTTCTCCTCGTACGGTAAAAACGGCAACGGCCCGACCAACGCGTTCACCTCTTACGGGACAGGGTCCAACGTTGTGGGTTCCGGGTTCTCCAACTATGCCGAAAACACAAATGCTCCCAACGACACCTTCAAAGGCTACGGCGTCGACATGAACAACCCCACCAACACGTTCTCCAACTACGCCGCCGGAGGGAACGGCGCCGTCGAGAAGTTCTCCAATTACCGCGACAAGGCGAACGTTGGCGCCGACTCCTTCACCTCGTACGCGAAATCCGCAAACGCTGCCGACGTCGGTTTCAGCAACTACGGCAAATCCTTCAACGAAGGCACCGACGCGTTCACCTCGTACGCGAAATCCTCGAACGGCGGCACGAAAGTGGGTTTCACTTCCTACGGCGTGAACAACACCTTCAAGGAGTACTCAAAAGAAACAGCCACTTTCTCGTTCGCCAAGTACACAAACGTGAGCACCACGCTGAGCGTTTCGGCTTCCGAGGCCAGTGGTAGAATGGTAAATAAGTGGGTGGAGCCGGGTAAATTCTTCAGGGAGGAGATGATGAAGGAAGGAACGGTGATGCCGATGCCTGACATAAGAGATAAAATGCCGGAAAGGTCCTTTTTGCCCCGGAGCATTTTGTCCAAATTACCGTTTTCCGTTTCCAAGATTGACGAATTGAAGCGCATGTTCCGAGCCTCCGATAACGGTTCCATGGAGAGGATGATGCGCGAGAGCTTGGAGGAATGCGAGCGTGCGCCCAGTCGCGGCGAGACCAAACGGTGCGTTGGGTCTTTGGAGGACATGATCGACTTCGCCACGTCCGTTTTAGGGCGAAACGTCGCCGTTCGGAGCACGGAGAACGATAAGGGCTCGAAGAAGAGTGTGATGGTGGGACCCGTTAAGGGAATCAACGGTGGTAAAGTCACCCAATCCGTGTCCTGCCACCAGAGCCTGTTCCCGTACCTCCTCTATTACTGCCACGCTGTTCCTAAGGTTCGGCTCTACGAAGCGGATATTCTCGACCCGAAATCCAAGACCAAGATCAACCACGGCATTGCCATCTGTCACCTGGACACCTCCGATTGGAGCCCCACCCACGGAGCCTTTGTCTCGCTCGGGTCCGGTCCGGGTCGAATCGAGGTTTGCCACTGGATCTTCCAGAACGACATGGCCTGGACCATTGCCGATTGA 1881 0.5582 MNEQLTLLCLFILFSSLSVSFAGAADGEKNPFTPKAYAIRYWDKEIRSTLPKPPFLLSKASPLSAAESAAFVKLAAQNALDQRLPEFCASAKLLCFPEVGSSFEKHDKDANFAVYRDKNFTNYGTGRPGGVDSFKNYSEGENVPVNDFRRYSRDSAGHKDSFLSYSTEGNVVQQSFHTYAAGATGGAGDFKHYSEETNVPNLDFTSYSDDANGRTQSFTSYSENGNAGEQSFSSYGKNGNGPTNAFTSYGTGSNVVGSGFSNYAENTNAPNDTFKGYGVDMNNPTNTFSNYAAGGNGAVEKFSNYRDKANVGADSFTSYAKSANAADVGFSNYGKSFNEGTDAFTSYAKSSNGGTKVGFTSYGVNNTFKEYSKETATFSFAKYTNVSTTLSVSASEASGRMVNKWVEPGKFFREEMMKEGTVMPMPDIRDKMPERSFLPRSILSKLPFSVSKIDELKRMFRASDNGSMERMMRESLEECERAPSRGETKRCVGSLEDMIDFATSVLGRNVAVRSTENDKGSKKSVMVGPVKGINGGKVTQSVSCHQSLFPYLLYYCHAVPKVRLYEADILDPKSKTKINHGIAICHLDTSDWSPTHGAFVSLGSGPGRIEVCHWIFQNDMAWTIAD 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01168 626 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 13 626 - -
Vian10g01168 626 Pfam BURP domain 411 623 IPR004873 -
Vian10g01168 626 ProSiteProfiles BURP domain profile. 411 625 IPR004873 -
Vian10g01168 626 SMART BURP_2 409 625 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01168 Vian-Chr10 19187387 19189373 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01168 - - gmx:100776642 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01168 10 19187387 19189373 Vian10g01168 10 19187387 19189373 ECH