Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01166 ATGGCGGATTCCGCCTCTTCCCCTGCGACCCTACCTCCCAATCCTCAACCCTCCGAATCTGCACTTCCCAACCCACCCGATCCACTCCCCCAATCCTCAACACCACCTTCATCTACGCCCCTCGCTGCAAACCCTAATCCCAATCCAACGCTGCTCCCTCCACCGCCCGCCCTACTCTTTCAGGCCGGCACTACGCCGCAGGTCCCTGGCGTTCTCCCTCCCTCATTCCGCCCGCTTGCTCCGCAGGTGCCGCAATTCTCCCCTGTCCCGGCGCCCCACCCTGTCTACCAAAACCCTGCCGTTCCGCCTCCTGGCGTGGCCAGCGCCGCCACTCCGCAGCAGATGCAGCCGATGATGTCATACCAGGTTCAACCCGGCAATCCTGCCATGCGACCATTCACTCCGATCCCTAACGGTTACCCTCCAGCTCCGTCCGTAACTCCCGCGGGAATTCCTCGTTACCCCCCTCCTTATGGAACTATGATTCGTCCTGTCTTTCCCCCACGCCCTCCTGGAGCAGTTAACATACCTCCAATGTCACGCCCACCTGTAGCAGGGATCCCTACTGTTCGCCCAATTATTCCTCCTGTTGTCAGACCAATGGTAGCCCCTAGTGCTACCCCAGCTGAGAAGCCTCAAAACACAGTTTACATTGGCAAGATTGCATCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTCAATTATGTGGAACTATCAAGACCTGGAAACGTCCTCAAGATTTATCCACTGGAACTCCTACCAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAAGGGGTTCTCCGTGCCTTGAGACTCCTTACTAAATTGAATATTGACGGACAAGAACTGAAGGTCAACGTCAATCAAGCCATGAAAGAACACCTGGAGCGATATGTTCAGAAAAAAGCTGAGAACTTGAACAAAGAAAGTCAGGCAGGAGTAGTTGAAAAAGATGAAGGTGAACAAACTTCTAATGCAAATGAGGGTACAAAGGCAGAGAAAGAATCCTCAAATAAAGTGGATAGTGAATCAGTAAATAAGGAATCCCATGATGTGACAAACTTTGGGATTGTCACTGATGAAGATAGAGAAGGGGATCGTGAGGCTTTAGAAAAGATCACAAAGATGATAGAGGAAAGGTTGAAGACAAGACCTTTGCCTCCACCACCTGCACAGCCAACTGGTGATGGTTCTGTGAGTTTAACCTCAGAACAACCTGTTAAAACAAGAGAGGGAGACTCTGTTGATACAGAGAAGAATGAATCTGCTGAAAATAAAGGTGAGAAAGAGACAAACAGTGATAAACCTAGCAGTGAACGGGATAGGTCTGAAAGCCCTGATAGAAGACATGACAGAAAAAGCAGAGAGAGGGACCGAGATAGGGAATTAAAACGAGAAAAGGAAAGAGAACTTGAAAGATACGAGAGAGAAGCAGAGCGGGAACGTGTTCGGAAAGAGAGGGAACAAAGACGAAGAATTGAGGAGGCTGAACGTCAATATGAAGCATATTTGAAGGAATGGGAGTATAGAGAACGAGAGAAAGAGAAAGAGCGCCAATATGAAAAAGAGAAGGAAAAGGAAAGGGAACGTAAAAGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAAGATTCTAGGAAGAGGTGGCGAAGAAGTGCGATAGAGGAGAAGAGGAAGAAGAGGTCACGTGAGAAGGAAGATGACATGCTTGACAAACTAAAGGAAGAGGAAGAAATTGCTGAGGCTAAGAAGAAGGCCGAGGAGGAACAAAAGCGGCAAAGAGATGCTTTAAAACTATTAACTGAGCATGTGGTAAATGGTGGTAATGAAAATATGATTACTGAAGAGGTTACTAATGAAGTCAAAGGCAATATTACTGAACAAGATATTGTAGCTGATTATAGTCGTGAAGATCATACTGGTGATGGGAATGTACTAAATGTCACCAGTGATGAATTAACTATAGTTGCTCCAACTGATACACAAGGTAATGCTCCTACAAAAAAATTGGGATTTGGCCTAGTTGGTTCAGGGAAAAGAACAACTGTGCCTTCTGTTTTCCATGAAGAGGAGGATGATGATGCACACAAGGACAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTGCCTGGTCCAACACCACCAAATTTGGCCGCTGCTGCCGAATTTGCAAAGCGTATATCCAGTACAAATTTCAAGGAAGATAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGATAAGTCTAATCACCGTGATAGGGACAGAAATGATGAAGATGGTACTCACAACAGAGATGAAAACAAGGAGAGAATTCCTGAACGTGACAGGGATCGAGATCATGGATCGGAGAAACTTAAGACTTCTGATAACAAGAGGCTTTTGGATGCTAAACAATTGATTGATATGATACCGAAGACCAAGGAGGAGTTGTTCTCGTATGAGATAGATTGGGCAGTATATGATAAGCATCAACTACATGAAAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGGGAAGAAGAGACTACATTGATAGATTATATTGTTTCTAGTACACAAGAACATGTGAAAGCATCCCAAATGCTTGAGCGTCTTCAGATTATTTTGGACGAAGAGGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGTCTAGCTCTGAGGTCAAAATCATGA 2775 0.4533 MADSASSPATLPPNPQPSESALPNPPDPLPQSSTPPSSTPLAANPNPNPTLLPPPPALLFQAGTTPQVPGVLPPSFRPLAPQVPQFSPVPAPHPVYQNPAVPPPGVASAATPQQMQPMMSYQVQPGNPAMRPFTPIPNGYPPAPSVTPAGIPRYPPPYGTMIRPVFPPRPPGAVNIPPMSRPPVAGIPTVRPIIPPVVRPMVAPSATPAEKPQNTVYIGKIASTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKEHLERYVQKKAENLNKESQAGVVEKDEGEQTSNANEGTKAEKESSNKVDSESVNKESHDVTNFGIVTDEDREGDREALEKITKMIEERLKTRPLPPPPAQPTGDGSVSLTSEQPVKTREGDSVDTEKNESAENKGEKETNSDKPSSERDRSESPDRRHDRKSRERDRDRELKREKERELERYEREAERERVRKEREQRRRIEEAERQYEAYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSAIEEKRKKRSREKEDDMLDKLKEEEEIAEAKKKAEEEQKRQRDALKLLTEHVVNGGNENMITEEVTNEVKGNITEQDIVADYSREDHTGDGNVLNVTSDELTIVAPTDTQGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPTVPGPTPPNLAAAAEFAKRISSTNFKEDKLDGERDRSRRSNDKSNHRDRDRNDEDGTHNRDENKERIPERDRDRDHGSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHERMRPWISKKIKEFLGEEETTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01166 924 SMART pwi_2 840 913 IPR002483 GO:0006397
Vian10g01166 924 Coils Coil 560 607 - -
Vian10g01166 924 SMART rrm1_1 215 288 IPR000504 GO:0003723
Vian10g01166 924 Pfam PWI domain 847 910 IPR002483 GO:0006397
Vian10g01166 924 SUPERFAMILY RNA-binding domain, RBD 167 288 IPR035979 GO:0003676
Vian10g01166 924 MobiDBLite consensus disorder prediction 90 112 - -
Vian10g01166 924 MobiDBLite consensus disorder prediction 513 580 - -
Vian10g01166 924 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Vian10g01166 924 MobiDBLite consensus disorder prediction 305 368 - -
Vian10g01166 924 MobiDBLite consensus disorder prediction 334 368 - -
Vian10g01166 924 SUPERFAMILY PWI domain 845 912 IPR036483 GO:0006397
Vian10g01166 924 MobiDBLite consensus disorder prediction 10 60 - -
Vian10g01166 924 MobiDBLite consensus disorder prediction 746 808 - -
Vian10g01166 924 CDD RRM_RBM25 214 297 IPR034268 -
Vian10g01166 924 Coils Coil 459 508 - -
Vian10g01166 924 Gene3D PWI domain 803 919 - -
Vian10g01166 924 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 924 - -
Vian10g01166 924 Gene3D - 207 324 IPR012677 -
Vian10g01166 924 PRINTS Proline rich extensin signature 88 104 - -
Vian10g01166 924 PRINTS Proline rich extensin signature 62 83 - -
Vian10g01166 924 PRINTS Proline rich extensin signature 121 146 - -
Vian10g01166 924 PRINTS Proline rich extensin signature 7 19 - -
Vian10g01166 924 PRINTS Proline rich extensin signature 23 39 - -
Vian10g01166 924 Coils Coil 511 539 - -
Vian10g01166 924 MobiDBLite consensus disorder prediction 1 76 - -
Vian10g01166 924 MobiDBLite consensus disorder prediction 380 497 - -
Vian10g01166 924 ProSiteProfiles PWI domain profile. 827 924 IPR002483 GO:0006397
Vian10g01166 924 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 286 IPR000504 GO:0003723
Vian10g01166 924 FunFam RNA Binding Motif protein homolog 803 919 - -
Vian10g01166 924 MobiDBLite consensus disorder prediction 411 497 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01166 K12822 - gmx:100809428 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01166 10 19144287 19149836 Vian10g01166 10 19144287 19149836 ECH