Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01161 ATGGCTGCGGAGAACAACAACAACGTCGTTCAGGTTTCAGAGTTACCCGTCAAGAGACCCAGAGAAGAAGAACAAGACGGCGGAGAGAATGGCGTTCCCGACACCCTTTCAACGCTCCCCAATCACTCTCAACACTCTGGTATCTCTGCGGTTATTCCTGGTTGGTTCTCTGAAATCAGCCCAATGTGGCCTGGGGAGGCGCATTCTTTGAAGGTGGAAAAGGTTCTGTTTGAAGGGAAGTCTGACTATCAGAATGTCATGGTCTTCCAGTCGTCCACATATGGCAAGGTTCTTGTTCTTGATGGTGTCATTCAGCTTACAGAGAGGGATGAGTGTGCCTACCAAGAGATGATAACACATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGATTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGTGAAATAGCACGCTATTCCTCAGTAGAGAAGATAGACATTTGCGAAATAGACAAGATGGTTGTTGAGGTCTCCAAACAATTTTTTCCAGATGTAGCTGTAGGTTTCGAGGATCCACGTGTGACACTTAATATTGGTGATGGAGTTGCATATTTGAAGGCTGTTGAAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAAGAACTGTTTGAAAAGCCGTTTTTCGCATCGGTTGCAAGGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCATATGGATATCATTGAGGGCATTGTGGCCAATTGTCGTCAGATATTCAAAGGTTCTGTCAACTATGCATGGACCACTGTTCCTACATACCCGAGTGGGATGATTGGTTTTATGCTTTGTTCAACTGAGGGTCCTACTGTGGACTTCAAGAATCCAGTGTATTCTATAGATGAGGATGATAGTCAAACTAGACCATTGAAATTTTACAACTCTGAGCTTCATTCTGCGGCTTTCTGTTTGCCATCTTTTGCCAAGAGGGCTATTTGTTCTAAAACAAAGTGA 1026 0.4454 MAAENNNNVVQVSELPVKRPREEEQDGGENGVPDTLSTLPNHSQHSGISAVIPGWFSEISPMWPGEAHSLKVEKVLFEGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKILVIGGGDGGVLREIARYSSVEKIDICEIDKMVVEVSKQFFPDVAVGFEDPRVTLNIGDGVAYLKAVEEGTYDAVIVDSSDPIGPAQELFEKPFFASVARALRPGGVVCTQAESIWLHMDIIEGIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPTVDFKNPVYSIDEDDSQTRPLKFYNSELHSAAFCLPSFAKRAICSKTK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01161 341 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 132 145 IPR030373 -
Vian10g01161 341 PIRSF Spermidine_synth 42 341 IPR030668 GO:0006595
Vian10g01161 341 Gene3D Spermidine synthase, tetramerisation domain 35 107 IPR037163 -
Vian10g01161 341 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 290 IPR030374 -
Vian10g01161 341 FunFam Spermidine synthase 1 46 105 - -
Vian10g01161 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 51 336 IPR029063 -
Vian10g01161 341 PANTHER SPERMIDINE/SPERMINE SYNTHASE 45 339 IPR001045 GO:0003824
Vian10g01161 341 NCBIfam spermidine synthase 55 331 IPR001045 GO:0003824
Vian10g01161 341 Pfam Spermine/spermidine synthase domain 111 299 - -
Vian10g01161 341 FunFam Spermidine synthase 1 106 341 - -
Vian10g01161 341 Gene3D Vaccinia Virus protein VP39 108 341 IPR029063 -
Vian10g01161 341 CDD AdoMet_MTases 131 242 - -
Vian10g01161 341 MobiDBLite consensus disorder prediction 1 43 - -
Vian10g01161 341 Pfam Spermidine synthase tetramerisation domain 54 108 IPR035246 -
Vian10g01161 341 Hamap Polyamine aminopropyltransferase [speE]. 54 337 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01161 Vian-Chr10 19060224 19062970 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01161 K00797 - gmx:100792107 576.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01161 10 19060224 19062970 Vian10g01161 10 19060224 19062970 ECH