Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01155 ATGCTATACTCTCTAATCCGTTTGCGCCGTTACGCTTGTCCACACTCTCCGCTTCTTCGTATTCCTATTAACCGTTTCTCCTCCGCTGGTGCCGCCATGGTTGCTCACGCGAAGGACGACGCCTACCTTCAGGCGGCGATTCCGAAACGCATCAAGCTGTTCGATACTATTCAGGCGGAGCAGCGAACGCAGCGCCTCTCGCTCTCGCCGGATCCTATCAAAGTTACTCTTCCCGACGGCGGCGTGAAGGAGGCGAAGAAATGGCTCTCGACTCCGCTCGACGTGGCGCGCGAAATCTCTAAGAATTTGGCCAACAACGCGCTCATCGCCAAAGTCAATGGCGTGCTCTGGGATATGACGCGCCCGCTTGAGGACGATTGCCAGCTCCAGATCTTCAAGTTCGATGACGATGAAGGACGCGACACGTTCTGGCACTCCAGCGCGCACATTCTCGGCCAGTCTCTTGAGACGGAGTATGGTTGCAAGCTCTGCATTGGGCCTTGCACTACAAGAGGAGAGGGATTCTATTATGATGCGTTTTACGGTGACTTGGGTCTCAATGACGATCACTTCAAGCAAATTGAATCTGGCGCATTGAAGGCTGTTGCGATGCTACATTGGCTATGGGGTTTTATTCCGATTGAGATTATCAATGATTTGCCTGCCGACAAAACTATCACGGTATACAGATGTGGTCCCCTGGTTGACTTGTGTCGTGGACCCCATATTCCTAATACATCATTTGTCAAAGCAATTGCATGTTTAAAGGCTTCGTCAGCATATTGGAGGGGGGACAAAGATCGTGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATACTTGCATCGGCTGGAGGAGGCTAAAAAGTATGATCACCGGATTTTGGGTGTGAAGCAAGAGCTTATTCTTCATCATGAATGGAGCCCAGGAAGCTGGTTTTTTCTTCCACATGGTGCTCGTGTCTACAACAAACTCATGGACTTCATTAGAAATCAGTACAGAGACAGGGGTTATCAAGAGGTCATATCTCCAAATGTGTTTAACATGGATCTGTGGGTGCAATCTGGTCATGCTGCAAATTATAGAGAGGATATGTTTATTTTAGAGATTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGACACTGTCTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTCCGTTTTGCTGACTTTGGAGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTCGGAGATTTCAACAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGGAACGCATTGAGTTTCATCAATTATGTCTATAGCATATTTGGTTTCACATATGAGCTGAAGCTTTCAACGAGACCAGAGAAATACCTAGGAGATATTGCAACCTGGGATAAAGCTGAAAGTTCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGGCCCATTCCTCCAGTCCGCCCTTGATTCCTCTCTGCATCATATTATCTAATTTGCTTATGTTGGCAGTTTCATTCTGTTTGAATGAAGGGGATGGGGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCTGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACATAGAGCAATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCTTTCTGGCTCAGTCCTCGTCAAGCAATTGTATGTCCTGTGTCTGAAAAATCACAATCTTATGCACTACAGGTCAAAGATCAGATCCACCAAGCAGGATTTCATGTTGATGCTGATACAACTGATAGGAAGATTCAAAAGAAGGTACGAGAAGCACAATTAGCTCAATACAACTACATCTTGGTTGTCGGAGAGGAGGAAGCAAATACTGGACAGGTGAGTGTGCGAGTTAGAGACAAGGGAGATCATAACGTTATGAGTATAGAGAACCTACTTAAGCATTTCAGAGACGAAGCTGCAGCTTACCATTGA 2157 0.4529 MLYSLIRLRRYACPHSPLLRIPINRFSSAGAAMVAHAKDDAYLQAAIPKRIKLFDTIQAEQRTQRLSLSPDPIKVTLPDGGVKEAKKWLSTPLDVAREISKNLANNALIAKVNGVLWDMTRPLEDDCQLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIESGALKAVAMLHWLWGFIPIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARVYNKLMDFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNALSFINYVYSIFGFTYELKLSTRPEKYLGDIATWDKAESSLKEALDDFGKPWQAHSSSPPLIPLCIILSNLLMLAVSFCLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVKDQIHQAGFHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKGDHNVMSIENLLKHFRDEAAAYH 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01155 718 FunFam Threonyl-tRNA synthetase, mitochondrial 289 514 - -
Vian10g01155 718 SUPERFAMILY Class II aaRS ABD-related 609 714 - -
Vian10g01155 718 Gene3D - 137 280 - -
Vian10g01155 718 Gene3D - 71 132 IPR012675 -
Vian10g01155 718 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 226 275 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vian10g01155 718 CDD ThrRS_anticodon 621 711 IPR047246 -
Vian10g01155 718 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 324 616 IPR006195 -
Vian10g01155 718 CDD TGS_ThrRS 73 138 - -
Vian10g01155 718 Pfam Anticodon binding domain 623 712 IPR004154 -
Vian10g01155 718 SUPERFAMILY TGS-like 73 133 IPR012676 -
Vian10g01155 718 Gene3D - 615 718 IPR036621 -
Vian10g01155 718 PRINTS Threonyl-tRNA synthetase signature 385 413 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vian10g01155 718 PRINTS Threonyl-tRNA synthetase signature 589 602 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vian10g01155 718 PRINTS Threonyl-tRNA synthetase signature 418 441 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vian10g01155 718 PRINTS Threonyl-tRNA synthetase signature 616 628 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vian10g01155 718 Hamap Threonine--tRNA ligase [thrS]. 138 716 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vian10g01155 718 ProSiteProfiles TGS domain profile. 71 133 IPR004095 -
Vian10g01155 718 Gene3D - 213 239 - -
Vian10g01155 718 SMART tRNA_SAD_4 226 275 IPR012947 GO:0004812|GO:0005524|GO:0043039
Vian10g01155 718 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 379 611 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vian10g01155 718 FunFam Threonine--tRNA ligase mitochondrial 1 615 718 - -
Vian10g01155 718 FunFam Threonine--tRNA ligase, cytoplasmic 71 132 - -
Vian10g01155 718 CDD ThrRS_core 299 621 IPR033728 -
Vian10g01155 718 Gene3D Bira Bifunctional Protein; Domain 2 281 614 IPR045864 -
Vian10g01155 718 SUPERFAMILY ThrRS/AlaRS common domain 135 297 IPR018163 GO:0000166
Vian10g01155 718 PANTHER THREONINE-TRNA LIGASE 42 716 - -
Vian10g01155 718 SUPERFAMILY Class II aaRS and biotin synthetases 275 629 IPR045864 -
Vian10g01155 718 Pfam TGS domain 73 133 IPR004095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01155 Vian-Chr10 18913039 18922730 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01155 K01868 - gmx:100812652 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01155 10 18913039 18922730 Vian10g01155 10 18913039 18922730 ECH