Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01122 ATGTCCGATCATTCGAGGGGTCGCGTTACCATCACTCTAGGGCGTAGTGGTCAGGTTGTGAAGAGGGATGTATCTTCTGTAGATGTTTCTTCTTTCTCTTCTCTTCCCTCAGCTGGCACTAAGCGGTCTGTAAGAGACAGGATTGGAAACAATGTAGATGGTTCTGTGTGGCACGGAAATGGACTTGGCGGCAATAAACGACAGCGAGGAGATGTAAGCATACAAAATGGACTGGATGGAAATGATCTTCGGTTGAAGCTCATGCAAAAAAGTGCATCTAGGCATGCTGACAGCAACGGTAGTAAGAGGCATATGGATCTCCGTGAAAAACTTTCAAAGACAACTCACTCTCTGACAAATAGTTTTAGTTCAAAGCAGCGTATGCCAGAATCAAGGGAAACAAGTTTGTTGAGGCAAATTCCCTCGGCTAGAAGTTCTGATGATTTAATGCGCATGGAATCCATGAGAAGCTCGTACTCTCCGTGGACATGGGATCATATAAGGAGAAGATCACCAGATGGGTTTCCGAGTACTTCAAGGGGTATTTCCCCTCAAAGGGATGTCCAAGACCTACAGAGAAGGCCATTAAACAGGACATATGATGGCGTCAGACCAGTTCCATATGTAAGTCGAGATGTTCTTGAAGCTTCGAGGCCTCCAGTAAGTACACCTCAATCTTTCATGTCACGCTCTACAATGTCCACATTACCTCCAGTAACTGCAAAGCCTGTAGCATCTCATGCTGGCCAACTTCCTCCATCAAGCAGTGTTGCCCAAAGGTCATCATATGTGGGTGATGAACAAGTACAACAACCAAACCAGACTGTGGATGGTCTGTTACATGCACTAGGACTTCAAAAATATGCCATTCTCTTTAAGGCAGAGGAAGTGGATATGACTGCATTGAAGCAGATGGGAGAAAATGATCTCAAAGAACTCGGGATTCCTATGGGTCCAAGGAAAAAAATTCTTCTCGCTCTCTTGCCCCGTACCAAGCGTCAACAATGA 1008 0.4534 MSDHSRGRVTITLGRSGQVVKRDVSSVDVSSFSSLPSAGTKRSVRDRIGNNVDGSVWHGNGLGGNKRQRGDVSIQNGLDGNDLRLKLMQKSASRHADSNGSKRHMDLREKLSKTTHSLTNSFSSKQRMPESRETSLLRQIPSARSSDDLMRMESMRSSYSPWTWDHIRRRSPDGFPSTSRGISPQRDVQDLQRRPLNRTYDGVRPVPYVSRDVLEASRPPVSTPQSFMSRSTMSTLPPVTAKPVASHAGQLPPSSSVAQRSSYVGDEQVQQPNQTVDGLLHALGLQKYAILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLALLPRTKRQQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01122 335 MobiDBLite consensus disorder prediction 26 75 - -
Vian10g01122 335 SMART SAM_4 268 333 IPR001660 GO:0005515
Vian10g01122 335 FunFam DDHD domain-containing 2 274 335 - -
Vian10g01122 335 MobiDBLite consensus disorder prediction 26 40 - -
Vian10g01122 335 ProSiteProfiles SAM domain profile. 271 334 IPR001660 GO:0005515
Vian10g01122 335 Gene3D - 273 335 IPR013761 -
Vian10g01122 335 MobiDBLite consensus disorder prediction 90 113 - -
Vian10g01122 335 MobiDBLite consensus disorder prediction 216 235 - -
Vian10g01122 335 MobiDBLite consensus disorder prediction 219 235 - -
Vian10g01122 335 MobiDBLite consensus disorder prediction 90 137 - -
Vian10g01122 335 MobiDBLite consensus disorder prediction 114 137 - -
Vian10g01122 335 SUPERFAMILY SAM/Pointed domain 273 327 IPR013761 -
Vian10g01122 335 PANTHER SCP160 81 331 - -
Vian10g01122 335 Pfam SAM domain (Sterile alpha motif) 272 327 IPR001660 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01122 Vian-Chr10 17737069 17750373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01122 232 327 Glycosyltransferase AT3G07170 44.118 7.12e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01122 - - gmx:100797199 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01122 10 17737069 17750373 Vian10g01122 10 17737069 17750373 ECH