Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01116 ATGGGACTTCTTCGACATCCCATGTGTTGCCACTCACATAAACAGCAGCAACAACAACAAAGATCCTATGATCATTTCCATTCAGAATCATCAACCTCTTCTTCTCTCCATTCACAGCCAAGTCTTCCTTCAGTCCCTTCACTAAGTTTCCTCACCCCACAACAACTGCACCAACCCCAACAACAACCTCAAACCACCGTCAAAATCCACTCCTCCCCAATCTCCTCCCTCGCCCTCCACGGCAAACTCCTCTACAGCGCCGCCTCCAGCGGGGAGGTCAAAACATGCAGCAGAGACCCTTTCACCCTCCAATCCGACACCAGCACCAGCACCAACACCAACACCAACGTTGTTGTAGTTGCAACCACCAACGCGCCCATCAAGTCTCTCATCGTATACCAGGACACGCTCTTCACCGCACATCAAGATCACAAAATCCGAGTCTGGAAAGCCGACCAACCCACCAAGTGCATCGCCACGCTTCCCACGCTCCACGACCGTTTCTCCAAGCTATTCTCCTCCAAGAACTACGTTAAGGTGCGCCGCCACAAGAAGCGCACGTGGGTGCATCACGTGGACGCCGTGTCCACCCTCGCGCTCTCCCACGACGGCTCCCTGCTGTACTCCGCTTCCTGGGACAGGACGTTCAAAATCTGGGGAACCTCGGACTTCAAATGTTTGGAGTCCGTACAAAACGCGCACGAGGACGCGATTAACTCCTTGGTTTTGTCGAATGACGGCGCCGTCTACACGGGCTCCGCCGACACAAAGATAAAGATGTGGAAGAAGCGTAAGGGTGAGAAAAAGCATTCGCTTGTGGGAACGTTAGAGAAGCACAAATCCGCAGTTAACGCTCTGGCTCTTAGCGCAGATGGGTCGGTGCTGTATTCTGGCGCGTGTGACAGATCAATTTTAGTGTGGGAAAGTGATGATAATAATATGGCGGTGGTGGGGGCTTTAAGGGGACACACGAAGGCGATACTGTGTTTGGTGGTGATGGCGGATTTGGTGTGTAGTGGATCAGCTGATAACAGTGTTAGGGTATGGAGGAAAGAGACTGGGAAGGGTTATTCTTGTTTGGCGGTGTTGGAAGGTCATCGACGACCCGTGAAGTGTTTGGCTGTGGCTGTTGACTCCAACACTGGTGGTCCTGATCAGAATCATAGGTCTTATCTGGTTTACAGCGCAGGTTTGGACTGTGACATTAAAGTGTGGCAAATACGCGTTCCTTTGTTGTCACTCTGA 1245 0.5197 MGLLRHPMCCHSHKQQQQQQRSYDHFHSESSTSSSLHSQPSLPSVPSLSFLTPQQLHQPQQQPQTTVKIHSSPISSLALHGKLLYSAASSGEVKTCSRDPFTLQSDTSTSTNTNTNVVVVATTNAPIKSLIVYQDTLFTAHQDHKIRVWKADQPTKCIATLPTLHDRFSKLFSSKNYVKVRRHKKRTWVHHVDAVSTLALSHDGSLLYSASWDRTFKIWGTSDFKCLESVQNAHEDAINSLVLSNDGAVYTGSADTKIKMWKKRKGEKKHSLVGTLEKHKSAVNALALSADGSVLYSGACDRSILVWESDDNNMAVVGALRGHTKAILCLVVMADLVCSGSADNSVRVWRKETGKGYSCLAVLEGHRRPVKCLAVAVDSNTGGPDQNHRSYLVYSAGLDCDIKVWQIRVPLLSL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01116 414 MobiDBLite consensus disorder prediction 1 69 - -
Vian10g01116 414 Gene3D - 176 273 IPR015943 GO:0005515
Vian10g01116 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 229 IPR001680 GO:0005515
Vian10g01116 414 CDD WD40 67 406 - -
Vian10g01116 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 349 IPR001680 GO:0005515
Vian10g01116 414 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 22 408 IPR045182 -
Vian10g01116 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 349 - -
Vian10g01116 414 FunFam BnaA09g28200D protein 178 266 - -
Vian10g01116 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Vian10g01116 414 SMART WD40_4 313 350 IPR001680 GO:0005515
Vian10g01116 414 SMART WD40_4 181 220 IPR001680 GO:0005515
Vian10g01116 414 SMART WD40_4 113 150 IPR001680 GO:0005515
Vian10g01116 414 SMART WD40_4 356 406 IPR001680 GO:0005515
Vian10g01116 414 SMART WD40_4 269 308 IPR001680 GO:0005515
Vian10g01116 414 SMART WD40_4 60 97 IPR001680 GO:0005515
Vian10g01116 414 SMART WD40_4 223 262 IPR001680 GO:0005515
Vian10g01116 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 271 IPR001680 GO:0005515
Vian10g01116 414 Pfam WD domain, G-beta repeat 186 219 IPR001680 GO:0005515
Vian10g01116 414 Pfam WD domain, G-beta repeat 226 262 IPR001680 GO:0005515
Vian10g01116 414 Pfam WD domain, G-beta repeat 358 405 IPR001680 GO:0005515
Vian10g01116 414 Pfam WD domain, G-beta repeat 272 307 IPR001680 GO:0005515
Vian10g01116 414 Pfam WD domain, G-beta repeat 317 349 IPR001680 GO:0005515
Vian10g01116 414 MobiDBLite consensus disorder prediction 11 69 - -
Vian10g01116 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 219 - -
Vian10g01116 414 Gene3D - 274 412 IPR015943 GO:0005515
Vian10g01116 414 Gene3D - 52 175 IPR015943 GO:0005515
Vian10g01116 414 SUPERFAMILY WD40 repeat-like 59 407 IPR036322 GO:0005515
Vian10g01116 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01116 Vian-Chr10 14590383 14591627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01116 181 407 Miscellaneous Gene Families AT5G08390 23.810 7.45e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01116 - - vun:114174011 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01116 10 14590383 14591627 Vian10g01116 10 14590383 14591627 ECH