Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01080 ATGGAAGTGAAAACAGCAAAGGCAGTGGATAGAATTGCTCTCAAATTTAAGAGAAAGCAACCTACCCAGTATGCTGCACATGAATGTGGAGCTTTGCAGCCTTCAGGCAGGGTTGTAAAACAGATAAAATTGGGTGAATATAGAAAAAAACATGCAAATGCTGGTTCTCATATTGGGAAGTCCTTGAGTAACCGGTTTTTAAGCTATAAAAAAAGTGGGAAACCAGCTCGTCTGATGTTCTATAAGAATGGTGAGTGGGTGGACTTTCCAAGTGATATTCTTGACTTGGTTAAGAAAGATCTTGAAATCAAGAAGTCGGTTGTGGAGGTGGAGTTAAATGGGTATCATATGGTGTTAAATTTTTTCCATATGTATAAGTTGAACATGAAAACTGGTTTGCAACAACCAATGGCTTGGATTGATGAGGCAGGAGGCTGCTTTTTCCCTGAGGTCTATGCTACTTATGATGAAGAGCCTTATAATCTCTGGAAACAGGGCACTGGAAGAAGTACAGAGTCATATGATTCTAATGAAATAAAATTACAATTAGAAATTGAAATAAATGGACTGGATCAGTGGAAGTTGAGGGAGTGTTCTGACGAATCCAATTCATTATTTAACGGTATTAGAATTGATACTAAACAAAAGAGCTGTCCATATGATGTAGAAGTAGAAAATAGCATTAACAAAGAGGACTGTGAAAATGTTGACAAATCTATACAGCAAATGCAAGACATAGATTTAAATGCCTATACTGAATCTGTATATGGAATGTTGAATTTCGATTCTGTACAGAAGATATTTCTTAAGGGAATGAACAATAATGGCATTACTGATTCTGACATTGTTGGAATTGACCGGTGCTCAGGTGCATCAATGCAAGCACGATTGGAACTATTCTTGAAGCAAGCTGAAATTACACAAAAATGTCATGGGGATGCTAATGTTCAGTATGCTTGGCTTGCTTCTACTAAACGAGAACTGTATACAATGATGGAGTATGGGCTTGGCCACTGTAGACTATCTGCATTTAAAGGTTCATATGGCACTGGTGTTCATCTTGCAGCCGTTACCTGCCCTGACACCAGTGCACGTTATTGTGATGTTGACGAAAATGGGGTTCGACATTTGGTCCTTTGTCGTGTAATAATGGGGAACATGGAGATTCTCCGTCCTGGCACTGGTCAGTTCCAACCCAGTAGCTGTGAATATGATAATGGGGTGGATGACATTCAATGTCCGAGATATTATGTGGTGTGGAATATGAACATGAACACCCACATCTATCCAGAATTTGTTGTTAGCTTCAAGCTGTCTTTTGATGCCGAAGGTCTTTTTGGTGGAAGCGAAAGGAAGAATAATGTTTCCGGGGTTATGACTGCCTGCCATGGTCCTCAAGGACTGTTGCATTCTTGTGCAGTAGTTAAGGGAACAGCTCCCCCAAGAGGTCCAACATCGCCTTGGATGTCTTTTCCTTTGCTTTTTGCTGCTATCGGAAACAAGGTTCCTCCTAATGATATGGAACGTGTCAGAGAACATTATGAACAGTTCAGGTCAAAGCAGATATCCCGGGATGATTTTGTGAAGATACTGAGGTTAATAGTTGGAGATGCTCCATTGAAACTTGCAATGACACAACATCAATTTAAGATACCATCCAATGTTAAGGAAGGATAA 1677 0.3983 MEVKTAKAVDRIALKFKRKQPTQYAAHECGALQPSGRVVKQIKLGEYRKKHANAGSHIGKSLSNRFLSYKKSGKPARLMFYKNGEWVDFPSDILDLVKKDLEIKKSVVEVELNGYHMVLNFFHMYKLNMKTGLQQPMAWIDEAGGCFFPEVYATYDEEPYNLWKQGTGRSTESYDSNEIKLQLEIEINGLDQWKLRECSDESNSLFNGIRIDTKQKSCPYDVEVENSINKEDCENVDKSIQQMQDIDLNAYTESVYGMLNFDSVQKIFLKGMNNNGITDSDIVGIDRCSGASMQARLELFLKQAEITQKCHGDANVQYAWLASTKRELYTMMEYGLGHCRLSAFKGSYGTGVHLAAVTCPDTSARYCDVDENGVRHLVLCRVIMGNMEILRPGTGQFQPSSCEYDNGVDDIQCPRYYVVWNMNMNTHIYPEFVVSFKLSFDAEGLFGGSERKNNVSGVMTACHGPQGLLHSCAVVKGTAPPRGPTSPWMSFPLLFAAIGNKVPPNDMERVREHYEQFRSKQISRDDFVKILRLIVGDAPLKLAMTQHQFKIPSNVKEG 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01080 558 Gene3D - 255 439 - -
Vian10g01080 558 ProSiteProfiles RST domain profile. 482 553 IPR022003 -
Vian10g01080 558 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 53 546 IPR044964 -
Vian10g01080 558 SUPERFAMILY ADP-ribosylation 261 438 - -
Vian10g01080 558 Pfam RCD1-SRO-TAF4 (RST) plant domain 484 548 IPR022003 -
Vian10g01080 558 ProSiteProfiles PARP catalytic domain profile. 234 457 IPR012317 GO:0003950
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01080 Vian-Chr10 12384214 12387987 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01080 - - gmx:100800707 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01080 10 12384214 12387987 Vian10g01080 10 12384214 12387987 ECH