Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01042 ATGGCTGCTCTGCAATACTTGGAATCGCTGCGCAACGCGCACCCTGAGCTCGCCGAATGGTACAATTCGCTCGCGGATCTGTATCAGAAGAAGCTCTGGCATCAACTCACCCTCAAGCTCGAGCAGTTTGTCGCACTCGCTGTTTTTCAGGCTGGTGATGCGTTGATTCAATTATATCACAATTTCATCACAGACTTCGAGACTAAAATCAACCTTCTGAAGCTTGCACATTTTGCTGTTATAGTTTCTCGGCAGTATTCTGAAAAGGAAGCTGCTGTTGGTTATCTTGGAGGGGTCATTGAGAAGTTGCAGGCCACTAGAGAGCAGCGCATAGAAGAACCTATCCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGACCAGAAGGAATGCAAGAAACTCCTGGAAGATGGGAAGACTACACTTGACAGCATGACAGATATTGATCCATCTGTATATGCTAACTATTACTGGGTATCATCTCAATACCACAAGACCCGCCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTATTTGGCATACACATCAGTGGAGTCTCTATCAGAATCATTTAAGCTGGATTTAGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGGGACAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATCAAGAGCCTTCTGGGGACAAAAGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATTTAGTGCGATATCAAGAATTGTGTCGGGTGCATAATGCTGCTTTAAGTGCCCAACCAGCACTGGTTCAAAATGAACAGAAGTTGTTGGAGAAGATCAACATTCTCTGTCTGATGGAGATTATATTCAGTCGGCCTTCAGAAGATCGAACTATTCCATTGAGTGTAATTGCTGAGCGTACAAAACTTTCTATAGAGAATGTGGAACATCTCCTAATGAAGAGCTTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAACCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTTGACAGTTGGACGGGGAAAGTACACACTGCATTGTTATCCATCGAGGCAGAAACACCTGATCTAATCGGATCGTGA 1161 0.435 MAALQYLESLRNAHPELAEWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVGYLGGVIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKTTLDSMTDIDPSVYANYYWVSSQYHKTRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALSAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01042 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Vian10g01042 386 Pfam PCI domain 238 343 IPR000717 -
Vian10g01042 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Vian10g01042 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 4 384 IPR035298 -
Vian10g01042 386 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 174 373 - -
Vian10g01042 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 IPR000717 -
Vian10g01042 386 Gene3D - 223 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01042 Vian-Chr10 11576499 11582098 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01042 K03039 - gmx:100804455 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01042 10 11576499 11582098 Vian10g01042 10 11576499 11582098 ECH