Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00961 ATGAGTTTGCCAAGGTTTGGACGTCCCAAGAATGGTGGTGAGTTGAGTTCGAACCTTTACGTGGCCAATTGTGGGCCCGCGGTGGGGATTTCTGATGATGACATTGCATCAGTGTTCTGCAAATTTGGAGAGCTTAAGGGAGTTTATGCAGCAGACGATAGTGGGACACGTGTCATTGTGGCCTATGCTGAAGAGGGCTCTGCACAAGCTGCCTTGAAGGCATTACATGGACGCCCATGTCCTCAACTTGGAGGTCGATCCATGCATATCCGTTATTCCGTGCTTCAGCCAAATATACAGGATCAAGCTAGTGACTTGGTTCCTGTATCTATCTCTGCATCAGAAGTGAGCATTCCAGGCCTTTACCTAATTCATGACTTCATTAGTGCTAAAGAAGAAGAGGAACTGCTTCAGGCTGTTGACTGCAGGCCCTGGAACAGTCTTGCAAAAAGAAGGGTTCAACACTACGGTTATGAGTTTCGCTATGATACTAGGAACGTTAATACAAGGCATTGCTTAGGTGAACTTCCGTCATTTGTTTCTCCAATACTGGAAAGAATTTCATCATGTCCAAGTTTCAAGAATATTAAAAATATAGTTTTGGACCAACTTACGGTAAATGAGTACCCACCTGGAGTGGGTCTGTCCCCTCATATAGACACTCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCCTGTATAATGGAGTTCAGACGGTATGAAAATGGTGATTGGCTTCCTAAAGTTGCCTCAAGTTCTATTGCAAAATCAGAAAATACAGAAGATCAATCAAATTTTAAAAGGAGAGCTATCTATCTTCCTCCTCGGTCTTTGCTACTCTTGTCTGGAGAAGCACGTTTTGCCTGGCATCATTACATTCCACATCACAAGATTGATAAAGTTAATGGCAATGTCATTAGAAGGGCTTCAAGAAGGGTATCTTTTACATTTCGTAAGGTTAGAGCAGGTTTATGCAAATGTGATTTTCCTCAGTATTGCGATTCTCAAAGATAA 1029 0.4237 MSLPRFGRPKNGGELSSNLYVANCGPAVGISDDDIASVFCKFGELKGVYAADDSGTRVIVAYAEEGSAQAALKALHGRPCPQLGGRSMHIRYSVLQPNIQDQASDLVPVSISASEVSIPGLYLIHDFISAKEEEELLQAVDCRPWNSLAKRRVQHYGYEFRYDTRNVNTRHCLGELPSFVSPILERISSCPSFKNIKNIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCIMEFRRYENGDWLPKVASSSIAKSENTEDQSNFKRRAIYLPPRSLLLLSGEARFAWHHYIPHHKIDKVNGNVIRRASRRVSFTFRKVRAGLCKCDFPQYCDSQR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00961 342 Gene3D - 7 107 IPR012677 -
Vian10g00961 342 SUPERFAMILY RNA-binding domain, RBD 12 99 IPR035979 GO:0003676
Vian10g00961 342 Pfam 2OG-Fe(II) oxygenase superfamily 154 323 IPR027450 -
Vian10g00961 342 SMART rrm1_1 18 91 IPR000504 GO:0003723
Vian10g00961 342 Gene3D - 111 330 IPR037151 -
Vian10g00961 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 326 IPR005123 -
Vian10g00961 342 PANTHER OXYGENASE-RELATED 92 338 IPR032857 GO:0070988
Vian10g00961 342 FunFam ALKylated DNA repair protein AlkB homolog 114 329 - -
Vian10g00961 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Vian10g00961 342 SUPERFAMILY Clavaminate synthase-like 118 326 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00961 K10770 - gmx:100777529 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00961 10 10406111 10409635 Vian10g00961 10 10406111 10409635 ECH