Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00948 ATGATGTTACTGTTTCTTTTAAATTATTTTTATCTTTTTTTTCAGTCACAATATTCTGGGTCCCCAAGTTCCCCTGTGGCCTCAGTTGGAGGTAGAAATTTGACAGAATCAATCCAAAGGCAAGATACCCCTGAGATATCTAGTAAACCCTTTCCTGTTGGGTTGCCTTCTTATCAGTTGGTAACTGAATTGGGACCTTCAAATTCATCTTTTGCTACTCAAGTTGCCAGTCATCCATCTTTTTCTTCAGCAATGAGTTGGCAAGGGCCTAATGATGTATCTAGCAGTGGTTCTCATTCTCTGCTACAATCTAGTTCCCTTTACTCCCCATCAATGGCAGCATCTGTAGTTGTGCAGAATCAGATTAAAAATGAAGAAACTCAGTTACCTACAAAGGGGGGATGGACAGGTTTTTCAGAGCGTGGTCTACCTATATCTTCTGCCATGACTTCTTCTCTTGTTAATTTGACTCATTTGCATTCTATTACCTCTTTACAAAATTCTGATTCTCTTGATGTTCCATCCCTTTCGATACCTGTGCCATATTCTGCATCCATGACTTTTGATGGATCAAACATGCCCCAGTTTTCTTCACCTTATCAAGACATTTGTCCTGATCCAAGGCCAATTCATCCTCGACATTCTGCTCCTTCATTTGTAGATTCTACTTCAGGTCTCTTGCCAACAACACCATCTTTGTTAACTCCAGATCAATTTGCAAATCCTAGAGAACAGTTATTATCTACTTCACACAATTTGAATCCTAATCAAAAGGGTATGGGTTCTCTGACTCAAACATCCTTTGGTTCCTCTTCATTAATGCCATTTCCAACATCTCAGGCACCGCTGCTTCCATTACCTACTTCAGTGCAAAAGCCTCAATACATAGCTCCACAATTCACTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAGAAAAGATGAAGTATGGGGCTCTCTTGGAAAGGCAACCACAAAAATAGAGGGAGTACAGGATAATCTCAATCCGGGTAGCAGGGAATATCATGGGATGGTACCAAACCATAAGTCAGCATACAAGAAAGATGACTTTTTTGACACAATTTCCTGTAACTCTTTGACCCGTGGATCAAGGAACGGACAAAATCGTTTCTCCGAGAGAATGAAACAGGATACAGAGACATTTGGCAATTTCCAGCAGAGGCATAATTTTAGTTATGGTGCTGGATGGGGTGAGAATTTCAGGGGCTCATATAATTGGGGAGGAAGGGGTTATGGCTATGGTGGGAGAGGGCGTGGTCCAAACTTTCCTCTCTAG 1302 0.4109 MMLLFLLNYFYLFFQSQYSGSPSSPVASVGGRNLTESIQRQDTPEISSKPFPVGLPSYQLVTELGPSNSSFATQVASHPSFSSAMSWQGPNDVSSSGSHSLLQSSSLYSPSMAASVVVQNQIKNEETQLPTKGGWTGFSERGLPISSAMTSSLVNLTHLHSITSLQNSDSLDVPSLSIPVPYSASMTFDGSNMPQFSSPYQDICPDPRPIHPRHSAPSFVDSTSGLLPTTPSLLTPDQFANPREQLLSTSHNLNPNQKGMGSLTQTSFGSSSLMPFPTSQAPLLPLPTSVQKPQYIAPQFTEEFDFEAMNEKFRKDEVWGSLGKATTKIEGVQDNLNPGSREYHGMVPNHKSAYKKDDFFDTISCNSLTRGSRNGQNRFSERMKQDTETFGNFQQRHNFSYGAGWGENFRGSYNWGGRGYGYGGRGRGPNFPL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00948 433 ProSiteProfiles FFD box profile. 352 367 IPR025761 -
Vian10g00948 433 ProSiteProfiles DFDF domain profile. 292 328 IPR025762 -
Vian10g00948 433 ProSiteProfiles TFG box profile. 374 394 IPR025768 -
Vian10g00948 433 PANTHER SCD6 PROTEIN-RELATED 42 428 - -
Vian10g00948 433 SMART FDF_2 298 394 IPR019050 -
Vian10g00948 433 Pfam FDF domain 299 392 IPR019050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00948 Vian-Chr10 9944828 9948336 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00948 K18749 - gmx:102669894 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00948 10 9944828 9948336 Vian10g00948 10 9944828 9948336 ECH