Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00939 ATGGCGCTAACTAGGGTTTTCGGTGCGACCGCTGGCAGGGCATTCATGGAGGCGGCAGCGAAGAACGCGGCCAAGGTAAAAGCTTCTCCATCAGGCGGAGCAGCTGCAAAACCCGCGGGGAAGAAGACATCTATGGCTAGAGCCAACACCGGCATACAGAAGCCGGTTCCGGTCTCTTCCGAGCTCGGCAACTTCGTCGGCGCTTCTGAAGTGTCACGAACCGCCGCGGTTAAAAAAGTGTGGGAGTACATCAAGCAGCAGAATCTTCAGGTCTTGTTTCCGTTCTCGCTCAATGCTGCTATTTCTCTATGTTTTAGAGTCGTGGCTCTGATGTGCTTTGTTTTGCGTAAACCGTTGTTCTATTTATTGGAATTGAATGAGAATCCTTCAAATAAGAGGGAGGTCTTTTGTGATGCAAAGCTGAAGACTATTTTTGCTGGGAAGGATAAGGTTGGGTTCACAGAGATTGCTACGTTGCTGTCTAGTCATTTCGGGAAATCAGGCTGA 507 0.497 MALTRVFGATAGRAFMEAAAKNAAKVKASPSGGAAAKPAGKKTSMARANTGIQKPVPVSSELGNFVGASEVSRTAAVKKVWEYIKQQNLQVLFPFSLNAAISLCFRVVALMCFVLRKPLFYLLELNENPSNKREVFCDAKLKTIFAGKDKVGFTEIATLLSSHFGKSG 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00939 168 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 36 164 - -
Vian10g00939 168 SUPERFAMILY SWIB/MDM2 domain 49 166 IPR036885 -
Vian10g00939 168 CDD SWIB-MDM2_like 56 164 - -
Vian10g00939 168 SMART swib_2 52 168 IPR019835 -
Vian10g00939 168 Pfam SWIB/MDM2 domain 54 90 IPR003121 -
Vian10g00939 168 Pfam SWIB/MDM2 domain 128 164 IPR003121 -
Vian10g00939 168 Gene3D SWIB/MDM2 domain 46 168 IPR036885 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian10g00939 SWIB 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00939 - - gmx:100795307 147.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00939 10 9756897 9758456 Vian10g00939 10 9756897 9758456 ECH