Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00931 ATGGTACGCATCACTGCACCTGTACCAACAGTAGCAACCCACCACCTATTCTTCGACCAAAACCTTGATCTGAAGAACAACAACCTAAGTAGTTTGCCTTCTCCCAGCCATCAACTCGAGCTTCTACCACCGCTGCGCTACCCCATTCACACTTTTCCGCGTCCCCTCATTCCTCAAACAACTACTTTCACCATGAAGGAGCCAAAGAAAAAGAAAAGAAAAGAGGCTACAACCTCAGACATATTGCACTTGATGGACGCTCTACCTTTTCCTATACCCGTTGACATCTATACCTCATTGATAAAAGAGTGCACTGTTTCCGGTGACCCAGAAACTGCCATTGAGTTGTACACCCACATCTCCAAGAGCGGCATGAAACCCCCCTTGCCTTTCCTCAATCGGATTCTCATTATGTTTGTGTCCTGTGGCCTGTTGGAAAATGCACGCCACATGTTTGACAAAATGCGTGTTAGGGACTTCAACTCTTGGGCGACCTTGTTTGTTGCGTACTATGATAATGCTGATTATGAGGAGGCTACTGCTGTTTTTGTCAACATGTTAGGCCAATTGGGTACGTTGGAGTTTCCTCCGTGGATATGGGCTTGTCTTCTCAGGGCTTGTGCATGCACTTTGAATATCCCTCTGGGATTGCAAGTTCATGGCTGGTTGTTGAAGTTGGGTACTTGTGATCATGTGCTTCTCAGCAGCTCTTTGATAAACTTTTACGGGAGATTCACGAGCCTGAAAGATGCGAGTGCGGTCTTCAATGGGGTGTCGCGGCATAACACGCTGACTTGGACGGCTAAAATCGTTAGTGGTTGCAGGGAAAGTCATTTCTCTGAGGTTTTTGGCGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTCAAGGCGTGTGGAAAGATGTTGAATCAGGAACGATGTGGTGAACAAGTCCATGCTGATGCCATCAAACTTGGGCTGGTCTCGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTGTTAAGAGATGCAAAACAAGTGTTTGAGATGATCCGAGAGGAGAAAAAGGTTGATTGCTGGAATGCTATGCTTTCGGGTTACACAAGGAATGGTTTCTACATTGAAGCTGTTAAGTTTCTGTATCAGATGCAGGCAGCTGGAATGCAGCCCCGGGAATCTCTGGTTAAAAAATTAAGAATTGCTTGTGGCAGTACTCAAACATGA 1251 0.462 MVRITAPVPTVATHHLFFDQNLDLKNNNLSSLPSPSHQLELLPPLRYPIHTFPRPLIPQTTTFTMKEPKKKKRKEATTSDILHLMDALPFPIPVDIYTSLIKECTVSGDPETAIELYTHISKSGMKPPLPFLNRILIMFVSCGLLENARHMFDKMRVRDFNSWATLFVAYYDNADYEEATAVFVNMLGQLGTLEFPPWIWACLLRACACTLNIPLGLQVHGWLLKLGTCDHVLLSSSLINFYGRFTSLKDASAVFNGVSRHNTLTWTAKIVSGCRESHFSEVFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLVSDHYVQCSLIAMYGRCGLLRDAKQVFEMIREEKKVDCWNAMLSGYTRNGFYIEAVKFLYQMQAAGMQPRESLVKKLRIACGSTQT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00931 416 NCBIfam pentatricopeptide repeat 368 399 IPR002885 -
Vian10g00931 416 Gene3D Tetratricopeptide repeat domain 69 210 IPR011990 GO:0005515
Vian10g00931 416 Gene3D Tetratricopeptide repeat domain 270 415 IPR011990 GO:0005515
Vian10g00931 416 Pfam PPR repeat 368 396 IPR002885 -
Vian10g00931 416 Pfam PPR repeat 339 363 IPR002885 -
Vian10g00931 416 Pfam PPR repeat 96 124 IPR002885 -
Vian10g00931 416 Pfam PPR repeat 135 159 IPR002885 -
Vian10g00931 416 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 262 401 IPR046960 GO:0003723|GO:0009451
Vian10g00931 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Vian10g00931 416 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Vian10g00931 416 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 317 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00931 Vian-Chr10 9638566 9639816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00931 166 416 Glycoside Hydrolase AT3G49170 23.396 1.97e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00931 - - gmx:100778405 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00931 10 9638566 9639816 Vian10g00931 10 9638566 9639816 ECH