Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00914 ATGGAAGTTCGCCGGCGACCCAACCGCTCCTCTCGCGTCGGTGAATCCCTGAAACAACCCGACCCTAATCCAAACCATGACGCCCATTCCCACCTCACCAACGCCCTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTTCCTCCTCCACCGATGGCGGGAGAAGATCCGCACCTCCACCCCCCTCCACCTCGTCACGCTCTCCGAGATTGCCGCAATCCTCTCCCTCATCGCCTCTTTCGTCTACCTAATGGCCTTCTTCGGCATTACCTTCATCCTCCACCCCTTCCTTAACTCCCGCACTTCCCCCGACGACGACCTCGACCTCCACATTACCAAACCCCCCGCCCCACCTCTCTCCCCGCCGCTGCCGCTCCCTCACGACAATAATGACCTCGTCCTCGCCGTCGTCTCCGGCTCCGTGCCCTCCTACTCCCTCGAGTCCCGCCTCGGAGACTGCCGTCGCGCCGCAGAGATCCGCCGCGAGGCGGTCGAGAGCCTCACCGGGAGGTCCCTCAAGGGCCTCCCTGTCGAAGGCTTCGATTACGACTCCATTCTCGGGCAGTGTTGTGAGATGCCGATTGGGTTCGTTCAGATCCCGGTAGGCGTCGCCGGACCGCTTCTTCTCGACGGGAACGAGTACACCATCCCCATGGCCACCACCGAGGGGTGCTTGGTCGCCAGCACCAACAGAGGCTGCAAGGCCATTCACCTCTCCGGCGGAGCTTCCTCCATGCTCCTCCGTGACGCCATGACCAGAGCCCCCGTGGTTCGGTTCGCCTCTGCCAAACGCGCCTCTCAGCTCAAGTTCTACCTCGAAGATCCTCTCAATTTCGAATCCCTCGCCGTCGTTTTCAACAAGTCAAGCAGGTTTGCGAGATTGCAGGACATAAAAGTAGCAATGGCAGGGAAGAATCTATATATTAGATTCAGTTGCACTACAGCGGATGCCATGGGAATGAACATGGTTTCGAAAGGAGTTCAGAACGTGCTTAATTTTCTTCAGAGCGACTTCCCTGACATGGATGTTCTTGGGATATCAGGGAATTTCTGTTCGGATAAGAAAGCTGCGGCAGTGAACTGGATTGAGGGGAGAGGGAAATCGGTGGTGTGCGAGGCTGTTATTAAGGAGGAGGTGGTTAAGAAAGTGTTGAAGAGTAGCGTGGAGGCTTTGGTGGAACTTAATATGTTGAAGAACCTTACTGGGTCAGCCATGGCGGGTGCTCTTGGTGGCTTCAATGCCCATGCTAGTAACATCGTTTCCGCAGTTTACTTGGCCACTGGACAGGATCCTGCTCAGAATGTGGAGAGTTCTCACTGCATAACTATGATGGAACCCGTCAACGACGCCAAGGACCTTCACATCTCTGTCACCATGCCTTCCATTGAGGTGGGTACAGTTGGAGGGGGCACACAACTGGCATCTCAATCAGCTTGTCTTAATCTACTGGGGGTTAAGGGTGCGAGCAAAGACTCCCCCGGTGCAAATTCTAGGTTACTAGCAACCATAGTAGCTGGTTCAGTCCTTGCCGGAGAACTCTCACTCATGTCTGCAATTTCAGCTGGCCACCTTGTCAATAGCCATATGAAATACAACAGGTCTTGCAAGGATATCTCCCAAGTTGTTTCTTAA 1632 0.5509 MEVRRRPNRSSRVGESLKQPDPNPNHDAHSHLTNALFFTLFFSVAYFLLHRWREKIRTSTPLHLVTLSEIAAILSLIASFVYLMAFFGITFILHPFLNSRTSPDDDLDLHITKPPAPPLSPPLPLPHDNNDLVLAVVSGSVPSYSLESRLGDCRRAAEIRREAVESLTGRSLKGLPVEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGNEYTIPMATTEGCLVASTNRGCKAIHLSGGASSMLLRDAMTRAPVVRFASAKRASQLKFYLEDPLNFESLAVVFNKSSRFARLQDIKVAMAGKNLYIRFSCTTADAMGMNMVSKGVQNVLNFLQSDFPDMDVLGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKSSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEPVNDAKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRLLATIVAGSVLAGELSLMSAISAGHLVNSHMKYNRSCKDISQVVS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00914 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 307 325 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 452 473 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 398 424 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 347 372 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 216 236 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 189 210 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 250 366 - -
Vian10g00914 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 518 531 IPR023076 GO:0004420
Vian10g00914 543 Gene3D - 126 199 IPR023282 GO:0004420
Vian10g00914 543 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 351 528 - -
Vian10g00914 543 Pfam Hydroxymethylglutaryl-coenzyme A reductase 157 533 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 251 366 IPR009023 -
Vian10g00914 543 CDD HMG-CoA_reductase_classI 130 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vian10g00914 543 Gene3D - 250 366 IPR009023 -
Vian10g00914 543 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 125 199 - -
Vian10g00914 543 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 125 523 IPR009029 GO:0015936|GO:0016616
Vian10g00914 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 464 471 IPR023076 GO:0004420
Vian10g00914 543 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 128 533 IPR004554 GO:0004420|GO:0005515|GO:0008299
Vian10g00914 543 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 29 536 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 MobiDBLite consensus disorder prediction 1 25 - -
Vian10g00914 543 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 129 533 IPR002202 GO:0004420|GO:0015936
Vian10g00914 543 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 309 323 IPR023076 GO:0004420
Vian10g00914 543 Gene3D - 200 519 IPR023074 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00914 Vian-Chr10 9411805 9415379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00914 1 539 Lipid Metabolism Gene Families AT1G76490 67.295 0.0 791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00914 K00021 - gmx:100790033 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian7g01416 7 22646199 22649024 Vian10g00914 10 9411805 9415379 ECH
Vian10g00914 10 9411805 9415379 Vian10g00914 10 9411805 9415379 ECH