Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00892 ATGATGGCCAGCATAAAGCCTTTGCAGGAAGCAGTACGTAGTTCACTGCGTTCTGGCATTTTCCTGTTCGACTTCACGCGCGTTGTCGAGGAACTGGTTTTCAATAGCCTCGATGCTCGTGCCACAAAGGTATCAGTGTTTGTTGGTGTTGGGAGATCCTATTTGAAAGTAGTTGATAATGGAAGTGGAATTACTCGAGATGGTCTTGAGTTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTGGTTGACCTGAATGTTACGAGTGAGAATTTTGGTTTCCGTGGGGAGGCTTTGGCTTCCATTTCTGATGTCTCTGTGCTGGAAATTGTGACAAGAACACATGGAAGGCCAAATGGATATCAAAAAGTGTTGAAGGGTTGCAAGTGTTTATATCTTGGCATTGATGATGATAGAAAGGAAGTGGGCACCACAGTTGTCGTCCGTGATTTATTTTACAATCAACCAGTTCGGAGAAAATGCATACAGTCCAGTCCCAATAAGGTACTGCAATCAATCAAGAAGTGTGTAATGCGACTTGCACTTGTGCGTCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAACTCTTCTGCACACATTCTGCTTCTTCTCCTCTGTCACTTATAACCAGTGGCTTCGGGGTAGAGGTCACAAGCTCTCTTCACTATTTAGAAGTTGAGAATGATATCATAAAGCTTTCTGGATACGTATCCAGTCCTTGCAATACTTCAAACATTGAGGTCCTGCAGTATGTCTATGTTAACTCGCAATTTGTTTGCAAGGGCCCAATTCATAAGCTTCTGAGTCAACTGGCGGTCAGGTTTGAACATCTGAACTCATGGACTACTGATAATGAGTTCCGAAACAAGAAGAGAAGCAGGTGTCACCTGGGTATCGCTTATCTCTTGGATTTAAGTTGCCCCCGATCTATGTATGATTTGGCCTTTGAGCCATCAAAAACGTATGTTAAATTTAAGGATTGGACACCTATTCTAAACTTCATTGAGAAGGTCGTCAAACAATTCTGGGAGGAAAACATAGCTTCTGTAGAGCCCTCCAATCAATTTGCATACATGGTAGAAGATCAACAAGAGAAAGCATATGTCAGTGTCATTTCAGACGTACCAGATATGTCAAGGTTTAGAAACCAAAATCGTAAGGATTGCCTAGATCTATTCTTTTCTACTTCAGACAAGCTAATTGAAGATGACTATCATCAATCTAACAGGGAAGATGTTAGAACCTCCATTGATTACTTGGAGACCGCGATGTTCAAAGAGAAACAAAGTATAGGAGACTCTCTTTTTCAGACTGGTTATTCTGGCAACCTATTGGATGATTCACATGCCAAGTGCATATCCACTGTGACAAGAAGGCAGAAAAGTTTGCTGATGCATGATAGCAGCAGTTCGTTGAAAGGAGATAACTTTTTCTATAGTGAAATACCTGCTATAGAAAGTTTAAATGATTGTGTAGCTTTTGATGCACCGAGTTGTTCACATGGAAGAAAATTCCATAAAGAAGCTGATGCGATCAGTGAAGCATTTCAAGATGATTTACATTATGACTGCAATGGGCACAGTTTTGATGTAAATATTAATGGGGATTTGCAGAAACCTTTTCTAAAGGGATGCTCTACTCCAGGAAGTATCCTGCTTAAGAAAGATTTCTTTATAAATGATGGATATGAAATCCAAAAGGATAGCTTTATTAGCAAGCAAAATACAGGGGGTGGTAAGGATTTAAATGATGTACCTTTCGATGAACCAAGTTCTTCACATGGAAGAAAATTTGATAAAGAAGCTGATGTGATCAGTGAGTCATTTCAAGATGATTTATGTTATAACTACAATGGGTACAGATATGATGTAAATATTAATGGGGAGTTGCAGAAACCATTTCTAAAGGGATGCTCTGCACTAGGAAGTATCCTGTCAAAGAAAGATTTCTCTGGAAATGATAATCATGAACTCCAAACCGACAGCTTTTGTAGCAAGCAGAATACAGGGGAGGATTATAGAAGTGGTAAGGATTTATATGTCCATCCCTTTCCAGAAGTAAAAAAGAAATTGAAGATGTCTAAAAATTTCGATTTTCTTGAAAGACCATTGGCTGAAGAAAACATTCTCCCTTCAGATTTATGCTACTCAGCATCACAAATAGGAAGCTCTGACTCAGATGATCGGTCATTAAATTTTGAATGGCATCCTCTTTACCTAAAACCATCATCTCAAGGACATGCACTGGGTTTTTATCGTACAACTGATATCAAAGATGATATTCGAGGAGTATCTAGGTGCCTTAAATGGATCCATCATAAAAATCGTTTTGATGAAAGAGAAAATGAGTGCAATTTCAGCTACAATACGACATGGAATACCAACCAGCATCACTGTGCATCAAGTTATGCAAACATTGGATTTAATTTTGATGTTGCTGGTGATTCTGGTGAAATATTCAACAAATTAGGTGACTGCCATGATTTCAGTGACATACATTCTACAAAAAGGTCAGATATGTTAAACAAGAAGCTAGACTGGCTGTTGCCTGAGTTATGTGTTAAAAGATGCAAGATGCCTAACAAGGACAAAGGCAAAACAGATAAATTTAGAAATTCAACTGTGGAGGAAAATCATGAAAGATCTAGAAGAAGCATTTCAGCTCCTCCTTTTTATAGAAGCAAAAGGAGGTTTTTCTCTTTAAATCATCCCTCAGAAATAAAAGCTAAAAGACAGATTGACCGAGTGTATAACCCTGGCTTCAATCATGAAGAAGCTAGTAATTCTAAAGATCCTCAACAGCCTCCTGTTGCTCGTCACGAAAGCTCTAAAGATCTCTTATTGCAAGAATTCAAAATCAATGTGAAACAAACTTCAAAGGTTCTGGGTGCTATGCAGGTTAATGACATAACAGAGATTGAAGAACTTGACAGTTTCAACATTCAAAACTGTGCTCCATTTGGGGAATTGCTCTCTAAGGATGTCCAAGATCCCATAGATTATGGGACTAAGTGGAGGAATTGCTCACCTGATTTTACAAAGAATGATAGACCGGCGGCTAATACTCAATGTCGGAACAATATACTTGACATTTCTTCCGGATTGCATCTTGCTGGAGATTCATTGATTCCAGAAACTATCAGTAAGAAATGTCTTGAGGATGCTAAAGTTTTGCATCAGGTGGATAAAAAATTCATTCCAGTTGTGGCTGGCAGAACCCTTGTTGTTATTGATCAGCATGCAGCAGATGAAAGAATCAGACTGGAAGAATTGCGTCAAAAGGTATTGTCGGGAGAAGCAAAAACAGTAACCTATCTGCATACTGAACTGGAACTGGTACTGCCAGAGATTGGTTATCAACTACTTCATAGTTATAGCGAACAGATCAAAGATTGGGGCTGGATCTGCAACATCCATGCTAATAATTCCGAGACCTTTAGAAGGAATCTGGATGTTATAAAAAGACAAGAAACAAGGATCACACTTATTGCGGTACCGTGTATTTTAGGGGTCAAATTAAATGATGTTGATCTTTTAGAATTTCTTCAGCAGCTTGCTGATACTGATGGATCATCAACAATGCCACCCTCTGTCATACGATTGTTAAATTCGAAAGCATGCAGAGGTGCAATTATGTTTGGGGATTCATTGCTACCATCAGAATGTTCCCTTCTAGTTGAAGAGCTAAAGCATACATCGCTTTGTTTCCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTGGTCAACTTGGAGGCACTGCATAGTCAGATAGCCAAGCTTCGACTGATGAACGACTCTTCAAGTAAAAAGTGGCATGGATTACGTAAACATAAACTATGCGTTGAACGTGTAGCACAACGTTTAAATTCTGCTATGGAAGATTAG 3906 0.3899 MMASIKPLQEAVRSSLRSGIFLFDFTRVVEELVFNSLDARATKVSVFVGVGRSYLKVVDNGSGITRDGLELVGERYATSKFLNLVDLNVTSENFGFRGEALASISDVSVLEIVTRTHGRPNGYQKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFYNQPVRRKCIQSSPNKVLQSIKKCVMRLALVRPNISFKVVDIEREDELFCTHSASSPLSLITSGFGVEVTSSLHYLEVENDIIKLSGYVSSPCNTSNIEVLQYVYVNSQFVCKGPIHKLLSQLAVRFEHLNSWTTDNEFRNKKRSRCHLGIAYLLDLSCPRSMYDLAFEPSKTYVKFKDWTPILNFIEKVVKQFWEENIASVEPSNQFAYMVEDQQEKAYVSVISDVPDMSRFRNQNRKDCLDLFFSTSDKLIEDDYHQSNREDVRTSIDYLETAMFKEKQSIGDSLFQTGYSGNLLDDSHAKCISTVTRRQKSLLMHDSSSSLKGDNFFYSEIPAIESLNDCVAFDAPSCSHGRKFHKEADAISEAFQDDLHYDCNGHSFDVNINGDLQKPFLKGCSTPGSILLKKDFFINDGYEIQKDSFISKQNTGGGKDLNDVPFDEPSSSHGRKFDKEADVISESFQDDLCYNYNGYRYDVNINGELQKPFLKGCSALGSILSKKDFSGNDNHELQTDSFCSKQNTGEDYRSGKDLYVHPFPEVKKKLKMSKNFDFLERPLAEENILPSDLCYSASQIGSSDSDDRSLNFEWHPLYLKPSSQGHALGFYRTTDIKDDIRGVSRCLKWIHHKNRFDERENECNFSYNTTWNTNQHHCASSYANIGFNFDVAGDSGEIFNKLGDCHDFSDIHSTKRSDMLNKKLDWLLPELCVKRCKMPNKDKGKTDKFRNSTVEENHERSRRSISAPPFYRSKRRFFSLNHPSEIKAKRQIDRVYNPGFNHEEASNSKDPQQPPVARHESSKDLLLQEFKINVKQTSKVLGAMQVNDITEIEELDSFNIQNCAPFGELLSKDVQDPIDYGTKWRNCSPDFTKNDRPAANTQCRNNILDISSGLHLAGDSLIPETISKKCLEDAKVLHQVDKKFIPVVAGRTLVVIDQHAADERIRLEELRQKVLSGEAKTVTYLHTELELVLPEIGYQLLHSYSEQIKDWGWICNIHANNSETFRRNLDVIKRQETRITLIAVPCILGVKLNDVDLLEFLQQLADTDGSSTMPPSVIRLLNSKACRGAIMFGDSLLPSECSLLVEELKHTSLCFQCAHGRPTTVPLVNLEALHSQIAKLRLMNDSSSKKWHGLRKHKLCVERVAQRLNSAMED 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00892 1301 Gene3D - 218 356 IPR014721 -
Vian10g00892 1301 Gene3D - 1066 1254 IPR042120 -
Vian10g00892 1301 MobiDBLite consensus disorder prediction 868 893 - -
Vian10g00892 1301 FunFam DNA mismatch repair endonuclease MutL 2 214 - -
Vian10g00892 1301 MobiDBLite consensus disorder prediction 926 948 - -
Vian10g00892 1301 Pfam DNA mismatch repair protein, C-terminal domain 218 348 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vian10g00892 1301 MobiDBLite consensus disorder prediction 580 602 - -
Vian10g00892 1301 CDD HATPase_MutL-MLH-PMS-like 12 199 - -
Vian10g00892 1301 NCBIfam DNA mismatch repair endonuclease MutL 7 373 IPR002099 GO:0005524|GO:0006298|GO:0030983
Vian10g00892 1301 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 24 203 IPR036890 -
Vian10g00892 1301 MobiDBLite consensus disorder prediction 928 942 - -
Vian10g00892 1301 Pfam MutL C terminal dimerisation domain 1062 1223 IPR014790 GO:0005524|GO:0006298
Vian10g00892 1301 SUPERFAMILY Ribosomal protein S5 domain 2-like 199 350 IPR020568 -
Vian10g00892 1301 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 2 1259 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Vian10g00892 1301 FunFam MUTL protein homolog 3 1107 1218 - -
Vian10g00892 1301 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 121 - -
Vian10g00892 1301 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 95 101 IPR014762 -
Vian10g00892 1301 Gene3D - 1107 1218 IPR042121 -
Vian10g00892 1301 Gene3D - 3 209 IPR036890 -
Vian10g00892 1301 SMART MutL_C_2 1063 1223 IPR014790 GO:0005524|GO:0006298
Vian10g00892 1301 SUPERFAMILY DNA mismatch repair protein MutL 1061 1254 IPR037198 -
Vian10g00892 1301 SMART DNA_mis_repair_2 215 350 IPR013507 GO:0005524|GO:0006298|GO:0030983
Vian10g00892 1301 MobiDBLite consensus disorder prediction 868 892 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00892 K08739 - gmx:100788019 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00892 10 9000772 9010695 Vian10g00892 10 9000772 9010695 ECH