Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00888 ATGTTCGTGAAGAAACTCGTGGAGAAAGCATCCATAAAGAAGGCTGTTGGAAATTCAGTGGATGGGTTAAAAGCTAGTGATGTAGAACCACGTTTGGTGTTTCATCAAGGGGTACCATCTGGTGGTACCAAGTTTGCCTATGACAATATTCAGAAGATTCTTGCTCTTTCCACCAAGGATGGTCGGATTAAACTATTTGGAAAAGATAATGCCCAAGTCCTGCTTGAATCTAGAGAGCCGGTGCCTAGCAAATTTTTACAGGTTTGGGACATAGACAAGAAACTGCTCATTGACGTGTTCATTGTCAAAGAAGAAATAACCTGTTTTTCGGTTCTTCAACATAGCCTATTCATGTACATTGGATTTTCTAATGGTAATATTGCAGTTTTAAGTCTTGATCAACAACCATGGCATGTGGTTAGGATGAAATACTCCATACCCGTTTCAGCTTCCTATGGAAATTCAACAGAAGAATCTGATGATACTGTTGTCACACACGTACTGCCTCAACCAGCAGCTGAGAGTCAGAGAGTTCTCATAATCTTTAGAAATGGGCAAATAATATTGTGGGATATTCGAGAAAGCAGGTCCATCTTTAGAACTGGAGGAAGAATGTTACAAGCACGGTATAATGAAACAAAGAAAGTGTCTTCTGCATGTTGGGTATGTCCTTTCGGAAGTAAGGTGGTTGTGGGGTACAACAATGGAGAGCTCTTCATTTGGAGCATTCCTTCTCTAAACACAGGAAATAGTTTAGCAGCTGATTATAGCAGTCAAAATACTCCAATGTTCAAGTTTAACTTAGGATATAAATCAGACAAAACTTCAATAAGATCAGTAAAATGGATTTATGCAGAAGGAAGAGCTAGTCGACTATACGTTATGGGAGGTTCTGATTATGCCCCTTCAAACTTGTTGCAGGTAGTGTTGTTGAATGAGCATACAGAATCTCGCACAATTAAGATGGGGCTTCATTTGTTAGAAGGTTCTGTTGACATGCAGATCATATCAACCTCAAGCAAGCAGAGACAAAATTATTTCATTTTGCTTGGGAAATCAGGAAACGTATATCTGTATGATGATAATTTGATTGAGAGATATCTGTTGCAGAGCCAGTCTAAGTCCACTCCTTCACTGCCAAAGGAAGTGGTTGTGAAGTTACCACTGTCAGATTCAAGCATCACTACAGCAAAATTCATCTCCAACAATCCCAGTGCGTTTAGTTCTGAAGACGAGTATTACAGCCAGCTGATCAAGAATTATCCACCGCTTATTCCCATTGAAACAAATTTCAAAGATGGGATTAACTTCAGTGCTGCCAATTTCACTGGATTTTCGAACTTAAGAAACTTGTACATAACTGGACACAGCAATGGAGCCATAACTTTTTGGGATGCGTCATGTCCCTTTTTCACCCCAATTTTGCAATTAAAGCAACAGGCTGAAAATGATGTTTCTTTAAGTGGTGTTCCCTTGACAGAATTATATTTTGATAGCAACTCTCCACTCCTAATTTCTGGTGATCAAAGTGGGATGGTTCGTATCTATAGATTCAAACCTGAACCATATGCATCCAGCAGCTTCATGTCTCTTACTGGAAATACAAAGAAAGGGACTGATCATGTAATCCACAGTATGAAACTCGTAAAAACTAGTGGTGCTGTAATTTGCATGAACATAGATCATAACTCAAGGCACCTTGCTGTTGGTTCTGACCAAGGAAACGTTTCAGTCATTAACATAGATGATCCATCTTTGTTATACCGGAAAAATATTTCAAGTGAAATTTCCTCCAGTATCGTCTCTTTGCAGTTTAAAGCCTGCAGTTTGCGTGGTTTTGAGAAAAACATTTTACTAGTTGGAACAAAGGACTCATCTGTTCTAGCACTAGATAGTGAAACTGGAAATCCATTCAACACTGAAGCTATTCACCCTAAGAAGCCCTCTAAAGCCATATATATGCAAGTGTTGGATGGAGTAGGAGAACCAATCACAGGATCGGTTACAAAAGATGGCTTAGACTCAAGAGAAGGGAATCGTACTGATGATGCAACAGCAAAGCAATTGTACATTTTGCTGTGTTCTGAGAAAGCTTTGTATGTCTATTCTTTTGTGCATGCTGTACAGGGAGTTAAAAAGGTGCTTTACAAGAAGAAATTTCATTCCTCTTCATGTTGCTGGGCATCAACAATTTACAACCTCTCTGATATCAGTCTTCTTCTCCTTTTCACCAATGGGAAAGTGGAATTAAGGTCTTTGCCAGCTTTATCTCTGATAGCGGAGACTTCAATTAGAGGTTTCACTTATTCACCACCAAAATTGAAATCATATTCTGATAGCCAGATATGTTGTTCACGCAAAGGAGATCTTGTTTTGGTGAATGGTGATCAGGAAATTTTTGTTGTCTCATTGTTGGCCCAGAGGAATATTTTCAGGCTTTTGGACTCTGTTAGCTGCGTCTACAGAAAGGAAAGAATGCTATCAGAAGAAGAGCATGGTCCTAGCCCTGTAATCGATAAGGAAAAGAAAAAGGGTATATTCAGCTTCGTTATAAAAGATTTTACAAGTAGTGAAGAAAAGCATGGACCCCTCATGGGTAAAGAAGATCCCAAAGAAAACATACGGGAACTTTCAGCAGTATTCTCAAATGCGAACTTTGCATGTTACGATAATGATGATAAACCAACAGTGGATGAAAATGACATTGACTTAGAGGATCATGAAGAAAAACGCAAAGAACAAAGCATATTAGGAGCTCTTAATAAGAAGAAATTGGTTGGAAAATTTCAGTCTCTGAAAGGAAGGTTGAAAGAAATGAAGGGAAACTACCAGAAGGCATCAGATAAGGAAGGGCACCAGGAGGAAAAAGATGGTGCGCTGGATCAAATTAAGAAGAAATATGGATTTTCTTCTTCTTCCAATGAAACAACCGCTGCTAAACAGGCACAAATCAAGCTTCATGAAAACACATGGAAATTGCAGGGTACCAACCTTCGTTCCAGAGAGATGCAAGATACAGCAAAATCATTTTCATCATTGGCAAAACAAGTGCTCCGAACTGCTGAGCAGGATAGACAAAGTTGA 3084 0.3911 MFVKKLVEKASIKKAVGNSVDGLKASDVEPRLVFHQGVPSGGTKFAYDNIQKILALSTKDGRIKLFGKDNAQVLLESREPVPSKFLQVWDIDKKLLIDVFIVKEEITCFSVLQHSLFMYIGFSNGNIAVLSLDQQPWHVVRMKYSIPVSASYGNSTEESDDTVVTHVLPQPAAESQRVLIIFRNGQIILWDIRESRSIFRTGGRMLQARYNETKKVSSACWVCPFGSKVVVGYNNGELFIWSIPSLNTGNSLAADYSSQNTPMFKFNLGYKSDKTSIRSVKWIYAEGRASRLYVMGGSDYAPSNLLQVVLLNEHTESRTIKMGLHLLEGSVDMQIISTSSKQRQNYFILLGKSGNVYLYDDNLIERYLLQSQSKSTPSLPKEVVVKLPLSDSSITTAKFISNNPSAFSSEDEYYSQLIKNYPPLIPIETNFKDGINFSAANFTGFSNLRNLYITGHSNGAITFWDASCPFFTPILQLKQQAENDVSLSGVPLTELYFDSNSPLLISGDQSGMVRIYRFKPEPYASSSFMSLTGNTKKGTDHVIHSMKLVKTSGAVICMNIDHNSRHLAVGSDQGNVSVINIDDPSLLYRKNISSEISSSIVSLQFKACSLRGFEKNILLVGTKDSSVLALDSETGNPFNTEAIHPKKPSKAIYMQVLDGVGEPITGSVTKDGLDSREGNRTDDATAKQLYILLCSEKALYVYSFVHAVQGVKKVLYKKKFHSSSCCWASTIYNLSDISLLLLFTNGKVELRSLPALSLIAETSIRGFTYSPPKLKSYSDSQICCSRKGDLVLVNGDQEIFVVSLLAQRNIFRLLDSVSCVYRKERMLSEEEHGPSPVIDKEKKKGIFSFVIKDFTSSEEKHGPLMGKEDPKENIRELSAVFSNANFACYDNDDKPTVDENDIDLEDHEEKRKEQSILGALNKKKLVGKFQSLKGRLKEMKGNYQKASDKEGHQEEKDGALDQIKKKYGFSSSSNETTAAKQAQIKLHENTWKLQGTNLRSREMQDTAKSFSSLAKQVLRTAEQDRQS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00888 1027 CDD R-SNARE_STXBP5_6 962 1019 - -
Vian10g00888 1027 SUPERFAMILY WD40 repeat-like 45 520 IPR036322 GO:0005515
Vian10g00888 1027 MobiDBLite consensus disorder prediction 940 959 - -
Vian10g00888 1027 SUPERFAMILY WD40 repeat-like 444 810 IPR036322 GO:0005515
Vian10g00888 1027 Pfam Lethal giant larvae(Lgl) like, C-terminal 567 810 IPR013905 -
Vian10g00888 1027 Gene3D - 426 656 IPR015943 GO:0005515
Vian10g00888 1027 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 9 1020 - -
Vian10g00888 1027 SMART WD40_4 203 242 IPR001680 GO:0005515
Vian10g00888 1027 SMART WD40_4 539 580 IPR001680 GO:0005515
Vian10g00888 1027 SMART WD40_4 478 517 IPR001680 GO:0005515
Vian10g00888 1027 SMART WD40_4 93 131 IPR001680 GO:0005515
Vian10g00888 1027 SMART WD40_4 380 465 IPR001680 GO:0005515
Vian10g00888 1027 Coils Coil 929 949 - -
Vian10g00888 1027 Gene3D - 18 412 IPR015943 GO:0005515
Vian10g00888 1027 FunFam Syntaxin-binding protein 5 isoform A 167 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00888 Vian-Chr10 8937746 8947631 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00888 - - gmx:100782049 1752.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00888 10 8937746 8947631 Vian10g00888 10 8937746 8947631 ECH