Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00865 ATGGCGGTTCCATTCAGAATGAACCATAACAAACATGGCATGCTTGTTCGTTTGAAGATTTTCGTCAACTCTCAGAATTTTCACTCACATGCTCCCAAACCGGCCAAACAACCAAAACAAGATAGTCAGTCTCCAAAAGAAGAATTGGACTACTCTATTTGCGGAGATCGCATAGGCATCTCAGAATGGAGCACTTTGGATGCAGAGAAGCTTGGTGTAACTAGTTCTATGATTTCACACTCATCTATGTTTGTCCTGAAACTTCTTCGGAGAAAAGGTGAGAATATCCTTATACCCGATGAAATCCTAAGACTGTTGTGTGCCACTGCAATCTGCAATCTGTACAAACGAATAGAGCCTAACCCTATTTATGCAAAGGTGAAAAATCATTTTCGTCGTTCAGTTCATGCCCAAATTGTTGGCCGTCGTTTTCCAATATGCTTGGTTCATATTAAAGGTGCTGTAGTTGAGGTAACTAGTTTTGAGACAGTGGCACGAACTTCCAATGCGAAGGAACAATTTTTGTACTCTCAGCTGCCCAAATGCAGTAATAAAAAAGACTTATTTCGGTGCAAAAACTCCTTGCGTAGAGACTTCACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAATCTACGATTATACCAATGGAATGGCAGATTTGAGGACTTTAAAGAATAAAATTATGATTGAATTGAACTATATGATATCTTATGGAGCTGCTGAACCATCTTTGCGTCTACTTTGGAAATTCAAATTGCTTAAATTTTTACTTCCTTTACATGCAGCATATCTAGATGAACAGGCTATTGAAGAAGATGACCGAGCTTCCAATCTGTTGTTAAAGTTATTCTTTCATCTGGATAAGTTGCTTGCTTGCGATCGACCTTGTGATTGTACTCTCTGGATTGGATTGCTTGCATTTCACCTGGCATTAGTAAATGATCCTCAAGATGCTGTAGTGGTGTGGACTTTTGCATCTGTTCTACATCATGGAGAGTGGAAAGAAGGTGTTAAATTTGCTAAAGAACAGGCCAGAATGAGTGTTAATTTTGTACCTGAAATAAGAAAGTCTAATATATACAAATCAGATGATGAAATTGCAATAGCAGTTACTAAATTGGCATCTTTGGTGATGCACTCGATACATGCATTGGTTGATAAAAGTAGTCTTCGTCACTTCATGTGCAAGCCTAGATACCCATCTTCTCCACAATCTGACATGGTATTTGTATCCGGGAAAGCAGGGAAACGTGCTCATACAATTTTCCAAATGCTGGCCAATGATGGTATATTTTACAAGAGTGGAAGAAAAAAAAATTTGAAGATAAATTATGACATGCTTGGGAAGGGTGAACTTTCAGAGACTGGATTTGTTTTGGGCAAAATTGTACTTGAAACTATGAGTAGTGGAATTATTGGGGATGGGGAGGATTCTGAAGCTGGACAATGTCACCTAAAGACCAAGGGCACTGAAGAAATTGATCCATCGCCACATCCAGATCTGGTAAACCATCAAGTGGCGTCAATGGATGGTGAAGGACAACTTTTATCAATACCAAATTCAGAGTGCGGGAAAGGAGAAAACAAGAAACGGAAACTGGTTGAGGATAGTTGTATTGCGAGGAAGAAAATGGGTTCGGGGAACCATGAATTGTCTGAGGAATTTGAACGCAAGGAAAATAAAAAAGAGCAGCAGAAGCTAGTTAAGTTAAGCCAGAAGGTTGATCCATCCATGGCGAAGTACTCCGCAGAAAAGAATATTTATCACAGAAAACAACTGATAAATAATAGGAAGAAAATAACCAGTGCCAATAAATGTCTAGACCAAGCTATGCAAATGAAGACGGATGAACACAGCACATGTACGGCATCACAATCTGCAGAATCTGATAATCATCAGGTGATAGCTCACAACTTGGACATGGATGCAAAAACAACAGATAATAACAACTTGGACGTGGATGCAAAAACGCCAAATGAGTCGGACTTTAAGAAGAAAAAAAATATGCGTTTATCAATGATTAAACTCTTTCAAGTGAAGTAA 2052 0.386 MAVPFRMNHNKHGMLVRLKIFVNSQNFHSHAPKPAKQPKQDSQSPKEELDYSICGDRIGISEWSTLDAEKLGVTSSMISHSSMFVLKLLRRKGENILIPDEILRLLCATAICNLYKRIEPNPIYAKVKNHFRRSVHAQIVGRRFPICLVHIKGAVVEVTSFETVARTSNAKEQFLYSQLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTNGMADLRTLKNKIMIELNYMISYGAAEPSLRLLWKFKLLKFLLPLHAAYLDEQAIEEDDRASNLLLKLFFHLDKLLACDRPCDCTLWIGLLAFHLALVNDPQDAVVVWTFASVLHHGEWKEGVKFAKEQARMSVNFVPEIRKSNIYKSDDEIAIAVTKLASLVMHSIHALVDKSSLRHFMCKPRYPSSPQSDMVFVSGKAGKRAHTIFQMLANDGIFYKSGRKKNLKINYDMLGKGELSETGFVLGKIVLETMSSGIIGDGEDSEAGQCHLKTKGTEEIDPSPHPDLVNHQVASMDGEGQLLSIPNSECGKGENKKRKLVEDSCIARKKMGSGNHELSEEFERKENKKEQQKLVKLSQKVDPSMAKYSAEKNIYHRKQLINNRKKITSANKCLDQAMQMKTDEHSTCTASQSAESDNHQVIAHNLDMDAKTTDNNNLDVDAKTPNESDFKKKKNMRLSMIKLFQVK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00865 683 Gene3D Beta Polymerase, domain 2 117 225 IPR043519 -
Vian10g00865 683 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 227 486 - -
Vian10g00865 683 Pfam Poly A polymerase head domain 126 225 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vian10g00865 683 SUPERFAMILY Poly A polymerase C-terminal region-like 228 320 - -
Vian10g00865 683 SUPERFAMILY Nucleotidyltransferase 136 224 IPR043519 -
Vian10g00865 683 Pfam Probable RNA and SrmB- binding site of polymerase A 230 266 IPR032828 -
Vian10g00865 683 Coils Coil 551 576 - -
Vian10g00865 683 Gene3D - 226 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00865 Vian-Chr10 8684093 8692161 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00865 - - gmx:100794882 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00865 10 8684093 8692161 Vian10g00865 10 8684093 8692161 ECH