Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00857 ATGGCTTGTCTCAGCCGCCACCACCACCGCGCCTGGCTCACTACCCAAGACATGCTCCAACGCTGCCCTCTCTCCGCTCACCAACGTCGTCTCCACGATGACGCCGACTCAAACCCCATTAACGTCCCCTCTCTCTCCTCCGCCTACCGTCTCTTCCCCGTCTACGCCATGGGCGCCCTCGACCCCACAACCGAACCCGAATTGGACGGACCCGACCCTATTTGGAACGCTGTCAGAGAGGAGGCAAAGCTCGAGGCCGAGAAGGAGCCGATTTTGAGTAGCTTCCTGTACGCTAGTATTTTGGCGCACGATTGCTTCGAACAATCATTGGCCTTTGTCGTCGCCAACCGTCTCCAAAACGCTACTCTCTTGGCCACTCAGCTCATGGATATTTTCTGCAATGGTTATCATGCTCTGCAAGTACATCGAGTAGCCCATGCATTGTGGCACCAGGGACGCAAAGTCTTGGCCCTGGCTTTGCAAAGCCGTGTTAGTGAGGTTTTTGGAGTGGACATTCATCCAGCTGCGAAAATTGGGGAGGGAATTTTATTAGATCATGGGACAGGTGTGGTTATTGGTGAAACTGCTATTATTGGAAACAGAGTTTCATTGATGCACGGTGTAACGTTAGGAGGCACAGGAAAGGAAATTGGTGATCGCCATCCCAAAGTAGGTGAAGGGGCACTAATTGGAGCTAGTGCAACCATACTTGGGAATATAAAGATTGGTGAAGGTGCGATGATAGCCGCAGGTTCCCTCGTGTTAAAAGATGTTCCTCCCCACAGCATTGCGGCAGGAATACCAGCTAAAGTTATTAGTGGTCTAGAGGACCATGATCCATCTTTAACCATGAAGCATGGTAAGCAACACTTGGAGCATGACTTATCCTTGAGAATGACTTCTCTCTCTCTCTCTCTTGTTAAAGATAAAGATGCTACTAAAGATTTTTTCACACAAGTAGCTACTAACTTCAGAGATGAAAAGCCCAATGGAGCTCAAAATCCAGATAGAAATGAATGTCAGGGACATTCTGAAACGGCAACGTTTTCTGCTCTCCTTCGCTTGCACGCCGGCGTGAGATCCGTTTTGCCACCGGCGATCTCACCTCCACCGGCGCTTCTCGCCTTCAAATCGATTCTGCACCTGTGCTGCAAGAGGTCGATTGCATCGGGTGAAGGGGATACTGGTGGAATGATGGACACTCACGCGGAAGATTCTGTTAGACCTGAGGAGCATTTTCCTGATGAGGATCATCATTACGAAGATGGAAGCAATGGAAATATTGTATTGGAAAATGGATTGTCTGATGGTAATCAAGGTCCTGCTGATACTGACGATCAGCTTCTAGAAATGGTTATGGACCTCAGGTTTCAGAATGACTACTTAAAGTCCCAGTTTGAGGGATTGAAAATTGTAAACAGTGTACATAGTGATTCTAGTATACAGAAAGGAGTTGGTGGCTTAGAAGATGGGGATTCTGACATTGTGAAAGAACTAAAGGAAAAAATACTATTGTTGAATAAAGAATTTCTGGAAGAAAAGCAAACAAGAATTGCATCAGAGGAGGCTTTGAAGCATCTTCAAGTGGCATACTCAGAGGCAGAAGCAAAGGGCCAGGAGCTCTCTGAAAAGCTTGCAGAAGCTCAAACGAAGTTGGACCAAGAAATAAAAGAGCGTGATGAGAAGTATTCTGAACTTGACTCCAAGTTTAATAGGCTTCACAAGCGAGCAAAACAGCGTATTCAAGAAATTCAAAAGGAAAAAGATGATATTGAGGCCCGTTTCTCTGAGGTGAATGAAATTGCAGAGCGAGCATCATCCCAACAGTTAGCAATGCAACAAGAATTAGAGCGTACCAGGAAGCAAGCAAATGAGGCATTGAAAGCCATGGATGGTGATAGACAACAACTAAGAAGTGCAAACAACAATCTTCGAGATACCATTGAAGATTTAAAGCGTTCATTGCAACCTAAAGAGAGTGCTCTTGAAGCATTGCAACAATCACTTGCAGAAAAGGAACAGATGTTGGAGGATATGAGAGTGTTGCTTCAGGCTGCTGAAGAAAAAAGGCAAGCTGCACTAGTTGAGCTCTCTGCTAAGCACCAAAAGAATATAGAGAGTTTGGAGGCTCAACTTAATGATGCATTGTCTGACAGAAGTAAGGCAGCTGAGTCTATTTCTTCACTGCAGGTTCTAGTTGCAGAAAAAGAATCCAGAATTGCAGAGATGGAAGCAGCATCAACCGGGGAAGCAGCACGACTCAGAGCGGTGGTGGAAAGTGTGAAAGGGGAGCTTTCTCACCTAAAAGAGGAGCATGAAAAAGAAAGGGAAAGCTGGGAGACTGCTTCGCAAGCACTCAAAGCAAAACTCGACATTGCACAGAGCAACTGCATACATGCAGAAGTTGAAGTAGCCAAAATAAGAAGTCAGCTAGAATCAGAGGTATCTGCCCAAACAAGGATCCTCAATATGAGAGATGTGGAATTGTTGGCTGCTAAAGAAGAGATCCGCTCTCTAGAAAAGGAATTTTCTTCATACAAAGTTCGTGCACATGCACTTCTTCAAAAGAAAGATGCTGAACTGGTGGCTGCTAAAGATTCTGAACAACTCAGAGCTCTAGAGGAAACTCTGAAAGAGGTTGAAAATGAAGTCTTATCAATAACAGAAGAAAGGGATAAAGTTCTTCAAGATCTTCAATCTGCTATGGCTAATCATGAGAAGGAACTTGCAGAAAGAGACACAACCCTTGAAAATGTCAAGCAACAGATAAGGAGCTTGGAAATAAAGCTTGACTCAGTTAATGCTCAGCACCTAAAAGAGAAAGAGGAATGGGGACTAAGTCTTCAAAATGTAGAAGAAACATGGAGAAGTATCAAATGTGAGGCAATTAAGGCTGAAAATGAAGCAACTGCCACAAAAGATAAGCAAAAGGAATTGGAAGAGCTCAAACAACGATTTAAAAAACTGAAGGAAGAGCACACTTCATTTCATGATCTTGCTGATAGGACGATTGAGGAGAAAGATTATGAAATATCCAGACTTTTAGATGAAAATAAAAACCTTCGCCAGTCTCTTCAATCAAGACCACTAGTCGATCAAAATGATTCTTACACAACAGCCTCACATAAATTGGATTCAACAAATTTAAGCCCCTCTGCTGCAGAACAGCAAATTCTGCTTTTGGCTAGACAACAAGCGCAAAGAGAGGAGGAGTTAGCACAGTCACAGCGTCATATTTTAGCTCTTCAAGAAGAAATTGAAGAGCTTGAACATGAGAATCGTCTCCACAACCAACAGGTATTTATATGTGCCAAAGTTTTCTCTTCCACTGGCCATCACCAGTTCAGGTTGCTGACCACAAGATCAGATTCACTCCCCAAACTCTGGCCAAACCCCGCTGGTTTCATCTCATCTGAACTTGGATACCTCATATGCTCATGCAATTACTCCAACACAATTTCCATCTGCATTGTCACTATTTTCCATGTAACAGTGCATCCAGTCACTGTTTTCCTTACTTTTTGCAGTGCTGACCTTGAGGCAATGTTAAAGACTGAGCTTCGCAACATGGAAAGATCTAAGAAAAGGGAAGGTGTAGATATGACATATTTGAAGAATGTTATATTAAAGCTGCTTGAGACTGGTGAAGTTGAGGTATTGCTTCCGGTTATTGGAATGCTGCTTCAGTTTAGTCCAGAAGAGATGCAGAAGTGTCAACAGGCATATCACACCTCAACGGAAGTTCCACCTACTCCTGCAAGTGATACTTCAGGATCTGGCCTATCACTTTTCTCAAGATTCACATTTTCTTAA 3813 0.4388 MACLSRHHHRAWLTTQDMLQRCPLSAHQRRLHDDADSNPINVPSLSSAYRLFPVYAMGALDPTTEPELDGPDPIWNAVREEAKLEAEKEPILSSFLYASILAHDCFEQSLAFVVANRLQNATLLATQLMDIFCNGYHALQVHRVAHALWHQGRKVLALALQSRVSEVFGVDIHPAAKIGEGILLDHGTGVVIGETAIIGNRVSLMHGVTLGGTGKEIGDRHPKVGEGALIGASATILGNIKIGEGAMIAAGSLVLKDVPPHSIAAGIPAKVISGLEDHDPSLTMKHGKQHLEHDLSLRMTSLSLSLVKDKDATKDFFTQVATNFRDEKPNGAQNPDRNECQGHSETATFSALLRLHAGVRSVLPPAISPPPALLAFKSILHLCCKRSIASGEGDTGGMMDTHAEDSVRPEEHFPDEDHHYEDGSNGNIVLENGLSDGNQGPADTDDQLLEMVMDLRFQNDYLKSQFEGLKIVNSVHSDSSIQKGVGGLEDGDSDIVKELKEKILLLNKEFLEEKQTRIASEEALKHLQVAYSEAEAKGQELSEKLAEAQTKLDQEIKERDEKYSELDSKFNRLHKRAKQRIQEIQKEKDDIEARFSEVNEIAERASSQQLAMQQELERTRKQANEALKAMDGDRQQLRSANNNLRDTIEDLKRSLQPKESALEALQQSLAEKEQMLEDMRVLLQAAEEKRQAALVELSAKHQKNIESLEAQLNDALSDRSKAAESISSLQVLVAEKESRIAEMEAASTGEAARLRAVVESVKGELSHLKEEHEKERESWETASQALKAKLDIAQSNCIHAEVEVAKIRSQLESEVSAQTRILNMRDVELLAAKEEIRSLEKEFSSYKVRAHALLQKKDAELVAAKDSEQLRALEETLKEVENEVLSITEERDKVLQDLQSAMANHEKELAERDTTLENVKQQIRSLEIKLDSVNAQHLKEKEEWGLSLQNVEETWRSIKCEAIKAENEATATKDKQKELEELKQRFKKLKEEHTSFHDLADRTIEEKDYEISRLLDENKNLRQSLQSRPLVDQNDSYTTASHKLDSTNLSPSAAEQQILLLARQQAQREEELAQSQRHILALQEEIEELEHENRLHNQQVFICAKVFSSTGHHQFRLLTTRSDSLPKLWPNPAGFISSELGYLICSCNYSNTISICIVTIFHVTVHPVTVFLTFCSADLEAMLKTELRNMERSKKREGVDMTYLKNVILKLLETGEVEVLLPVIGMLLQFSPEEMQKCQQAYHTSTEVPPTPASDTSGSGLSLFSRFTFS 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00857 1270 Coils Coil 1065 1099 - -
Vian10g00857 1270 MobiDBLite consensus disorder prediction 391 417 - -
Vian10g00857 1270 Coils Coil 962 999 - -
Vian10g00857 1270 SMART 1grip 1197 1241 IPR000237 -
Vian10g00857 1270 PANTHER SERINE ACETYLTRANSFERASE 69 134 - -
Vian10g00857 1270 Pfam GRIP domain 1198 1237 IPR000237 -
Vian10g00857 1270 ProSiteProfiles GRIP domain profile. 1194 1241 IPR000237 -
Vian10g00857 1270 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 230 258 IPR018357 GO:0016740
Vian10g00857 1270 Coils Coil 1004 1024 - -
Vian10g00857 1270 CDD LbH_SAT 168 268 IPR045304 -
Vian10g00857 1270 SUPERFAMILY Trimeric LpxA-like enzymes 73 285 IPR011004 -
Vian10g00857 1270 Coils Coil 856 943 - -
Vian10g00857 1270 Coils Coil 524 565 - -
Vian10g00857 1270 Coils Coil 822 849 - -
Vian10g00857 1270 Pfam Serine acetyltransferase, N-terminal 74 137 IPR010493 GO:0005737|GO:0006535|GO:0009001
Vian10g00857 1270 Gene3D Hexapeptide repeat proteins 171 299 - -
Vian10g00857 1270 FunFam Serine acetyltransferase 171 292 - -
Vian10g00857 1270 Coils Coil 496 516 - -
Vian10g00857 1270 Coils Coil 751 789 - -
Vian10g00857 1270 Pfam Bacterial transferase hexapeptide (six repeats) 221 254 IPR001451 -
Vian10g00857 1270 Gene3D serine acetyltransferase, domain 1 61 132 IPR042122 -
Vian10g00857 1270 Gene3D serine acetyltransferase, domain 1 133 170 IPR042122 -
Vian10g00857 1270 MobiDBLite consensus disorder prediction 398 417 - -
Vian10g00857 1270 Coils Coil 574 746 - -
Vian10g00857 1270 SMART SATase_N_2_a 74 141 IPR010493 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00857 Vian-Chr10 8554489 8574673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00857 52 348 Miscellaneous Gene Families AT2G17640 56.845 6.31e-110 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00857 - - gmx:100795939 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00857 10 8554489 8574673 Vian10g00857 10 8554489 8574673 ECH