Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00856 ATGGCGACGACACGATCCGCGCCACTCCTCAAACACCTCCTGGCCCGCCTGAATCCGGCCCGATCCGTCACATACATGCCTCGGCCCGGCGACGGCACCCCGCGGGCGGTGACGCTGATCCCGGGCGACGGGATCGGTCCGCTGGTGACCGGCGCAGTGGAGCAGGTTATGGATGCGATGCATGCGCCAGTGTACTTCGAGAAGTATGAGGTGTACGGCGACATGAAGGCGGTGCCGGCGGAGGTGCTGGATTCGATTAGGAAGAATAAGGTGTGTTTGAAGGGAGGGCTGGCAACGCCTATGGGCGGCGGTGTGAGCTCGCTGAACGTGCAGCTGAGGAAGGAGCTTGATCTCTACGCTTCGCTTGTTAACTGCTTCAACCTCCCTGGCCTTCCCACGCGCCACGAGAACGTTGACATCGTTGTCATCAGAGAAAACACAGAGGGCGAGTACTCCGGCCTCGAACACGAGGTTGTTCCCGGCGTCGTCGAAAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCCAAATATGCTTTCGAGTATGCTTACCTAAATAATAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAGGTATCCCGGTATCAAGTATAATGAAATCATTGTAGACAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGGAATCTTGTCGCAAATACAGCGGCAGGTATTGCTGGAGGTACCGGAGTCATGCCGGGAGGTAATGTGGGGGCTGATCACGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATGAGAAAGTAGTAGAACAACAGAAAGCCAACCCAGTGGCACTCCTTCTTTCGTCGGCCATGATGCTTCGACATCTTCAGTTTCCTGCATTTGCTGACCGATTGGAAACTGCCGTTAAAAAGGTGATTTTGGAGGGTAAATATCGGACGAAGGACCTTGGAGGCACAAGCACCACACAAGAGGTAGTTGAAGCAGTGATAAATGCTTTAGATTGA 1095 0.5205 MATTRSAPLLKHLLARLNPARSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMDAMHAPVYFEKYEVYGDMKAVPAEVLDSIRKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKKVILEGKYRTKDLGGTSTTQEVVEAVINALD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00856 364 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 33 363 - -
Vian10g00856 364 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 35 363 - -
Vian10g00856 364 SMART Iso_dh_2 36 359 IPR024084 -
Vian10g00856 364 Pfam Isocitrate/isopropylmalate dehydrogenase 37 359 IPR024084 -
Vian10g00856 364 NCBIfam isocitrate dehydrogenase (NAD(+)) 33 363 IPR004434 GO:0006099
Vian10g00856 364 Gene3D Isopropylmalate Dehydrogenase 24 362 - -
Vian10g00856 364 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 24 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00856 Vian-Chr10 8544207 8547400 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00856 K00030 - gmx:100778831 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00856 10 8544207 8547400 Vian10g00856 10 8544207 8547400 ECH