Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00748 ATGTTTGGGAATGAACGAAGCATGTTGAGGAGGGTGGTACCCGTAGCTGGGTTCATTTCTAGGAGGTTACGAGCAGTGCGGCAAGTGCATGGAGATGGAGATAGAGATGGAGTTGGCGAAGAGCGTTTACATTTTCACAAGAGCAAAGGTCAACACATTCTCATCAACCCTAGAATTCTTGATACCATCGTTCGCAAATCCGCCATAAATCCAACCGACACTGTCCTCGAAATCGGACCTGGCACCGGCAACCTCACCCTCAAGCTTCTCGAAGCTGCGCACAAGGTAGTAGCATTCGAGATTGACCATCGCATGGTCCAGGTTCTCGAGAAGCGCGCTCTTAGACAAGGTCTCAAAGATAAGCTCAGGGTTATACAAAAAGATGCAATGAAAGTCCTGTTCCCGCGGTTTGATCTTGTTGTGGCCAACATTCCTTATCAGATATCTTCCCCTCTCGTGATCAAACTGGTGTATGGGCCGAGGCCGTTTCGGAGTGCCACGCTTCTTCTTCAGAAAGAGTTCGCTCGAAGGTTGTTGGCTAATCCCGGTGACTCTGAGTTTAGCCGGCTGTCGGTGAATGTGAAGCTTCTGGCTGATGTAGAGCTTGTGATGAATGTAAGCAAGAGGGACTTTCTCCCTTCCCCCAAAGTTGACTCTTCTGTGGTCATAATCCGCCCTAAGCCTCAGGTTCCCAATGTGGATCTCCGTGAGTGGAGGGCTTTCACCTCGAATTGTTTTAATAACCGTTACAAGACACTGGGGGCAATTTTTAAGAATAAGAGGAAAGTCTTTGAGTTGCTCAAAATCTCTAATGAAAACGATAAAGCTTCTTCCCACAAGGGTGATGATGCTGAAGATGAAGGAGGCTTTATCTCCTTCAAGGAAAAGATTATTGGGGTGCTTAGAACGGGAGAGTTTGAAGATAAAAGGCCTGTAAAACTTTCTATCGAGGAGCTTCTGCATTTGCTCTCTTTGTTCAATCAAGCTGGCATTTATTTTGCAAACCATGGACATCTCAAGAGGGAAGATAGGTTTGATGCCGATGATTAG 1050 0.4657 MFGNERSMLRRVVPVAGFISRRLRAVRQVHGDGDRDGVGEERLHFHKSKGQHILINPRILDTIVRKSAINPTDTVLEIGPGTGNLTLKLLEAAHKVVAFEIDHRMVQVLEKRALRQGLKDKLRVIQKDAMKVLFPRFDLVVANIPYQISSPLVIKLVYGPRPFRSATLLLQKEFARRLLANPGDSEFSRLSVNVKLLADVELVMNVSKRDFLPSPKVDSSVVIIRPKPQVPNVDLREWRAFTSNCFNNRYKTLGAIFKNKRKVFELLKISNENDKASSHKGDDAEDEGGFISFKEKIIGVLRTGEFEDKRPVKLSIEELLHLLSLFNQAGIYFANHGHLKREDRFDADD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00748 349 Gene3D Vaccinia Virus protein VP39 45 229 IPR029063 -
Vian10g00748 349 FunFam rRNA adenine N(6)-methyltransferase 45 229 - -
Vian10g00748 349 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 328 IPR029063 -
Vian10g00748 349 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 45 324 IPR011530 GO:0000179|GO:0006364
Vian10g00748 349 PANTHER DIMETHYLADENOSINE TRANSFERASE 42 328 IPR001737 -
Vian10g00748 349 CDD AdoMet_MTases 74 153 - -
Vian10g00748 349 Pfam Ribosomal RNA adenine dimethylase 44 271 IPR001737 -
Vian10g00748 349 Hamap Ribosomal RNA small subunit methyltransferase A [rsmA]. 43 327 IPR011530 GO:0000179|GO:0006364
Vian10g00748 349 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 45 330 IPR001737 -
Vian10g00748 349 SMART rADcneu6 59 228 IPR020598 GO:0000154|GO:0000179|GO:0008649
Vian10g00748 349 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 75 102 IPR020596 GO:0000154|GO:0000179|GO:0008649
Vian10g00748 349 Gene3D - 231 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00748 Vian-Chr10 7309826 7310989 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00748 K14191 - gmx:100790908 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00748 10 7309826 7310989 Vian10g00748 10 7309826 7310989 ECH