Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00687 ATGGGGGCAACTGGTTTAGGAACTGGAATATTGCTTGCAATGAGAATCATATATCACTTTTATCTTTTCTCTACCGAGGAAGCCCGTGGGTTATCTTTCCTTCTTCCTTTTGTAATACCAAAAAAAGTCATAATCTCCCTTAGCAACATGACTCTAGAAACACATGTTCACTCTTCTCCTAAATACCCCAGTGAATTTCAGTTTGTACCTCTGGTTATTATGGTGGGCCGCTGTGCGACGACGAGCAGCGGGCGTTCGATCACGGAGTGCACGTCTTGCGGGCGCAACGAGGACGAGGACCCTTTCGAGCCCACGGGCTTCATCACTGCCTTCTCCACGTGGTCCCTGGAGCCCAGCCCACTTTACCTTCAGTCCTCCCTCTCCTTCTCCGGCCACCTCGCCGAGCTTGAACGCACTCTGGAATCCTCCTCTTCCTCTTCCTCTTCTTCTTCGTCAACGGTTGTGGTTGATAATCTGAGGGCCTACATGCAGATTATCGATGTGGCGTCAATTCTAGGGTTGGACTGCGACATTTCCGACCACGCTTTTCAGTTGTTCAGGGATTGTTGCTCCGCTACGTGTTTGAGAAACCGGAGTGTGGAGGCGCTTGCTACTGCCGCTCTTGTTCAGGCCATCAGAGAGGCCCAGGAACCCAGAACCCTTCAGGAAATTTCAATTGCAGCCAATGTACAGCAAAAGGAAATTGGGAAATATATTAAGATACTGGGAGAGGCTTTGCAGCTAAGTCAACCTATTAACAGCAATTCCATTTCAGTTCATATGCCAAGATTTTGCACGCTTCTTCAGCTCAATAAATCTGCCCAGGAACTGGCTACTCACATTGGAGAGGTCGTGATCAACAAATGCTTCTGTACTCGCAGGAATCCTATTAGCATCTCAGCTGCTGCTATATATTTGGCTTGCCAACTTGAAGACAAGCGCAAAACCCAGGCAGAAATTTGTAAGGTGACTGGTCTTACTGAAGTCACTCTCCGTAAAGTGTACAAGGAACTATTGGAAAATTGGGATGATTTGCTTCCCTCTAATTACACCCCAGCTGTTCCTCCAGAGAGGGCATTTCCCACAACGATAATTGCTTCTGGCCGTTCTTCAACAGTTAAGGCTGATGCTGTAGAGGCTATTTCTTCTTTGGACTCAGAAAAGTTGACGGATATTAAACCTAGCAAACCCAATGAGGTCTCAGGCCTAGTTCATCAGCCCAAAGGGAAGGATGAGGCTGAAGGTAAAAGCAATGCACATGGAAGCCATTCCACACTGAATCAACAGTCAACTTTTTGGCAATCCCAGCTTCCCTGTGAGGATACAAATGGTTCTGCAAACGGTAATGCGTTAAAATCAAGCCAACTTTGCAGTCCTCCTGCTTCGAGTGCAAGTTCTGTTATGAGACCATTTTCAGCTCCCCCTTCAGCCGGCCCTTCAAATGTTCGATTAGGACAGTCACCTAAGATAATGCCAGATTTCGTTCAAAAGTCGGAGTCAATACAGGACAACCTGGAACTAGTGCTCTATGTGTATTTCGTGCCCCTCCTCATCTCATCTCTACTCGAGGACTTAATTCTGAAGGGCTGTTCATCCATAGCAGGGTCGAGTAAGAAGTGCATCACATCGGTACCACCATGA 1641 0.4723 MGATGLGTGILLAMRIIYHFYLFSTEEARGLSFLLPFVIPKKVIISLSNMTLETHVHSSPKYPSEFQFVPLVIMVGRCATTSSGRSITECTSCGRNEDEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGHLAELERTLESSSSSSSSSSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTIIASGRSSTVKADAVEAISSLDSEKLTDIKPSKPNEVSGLVHQPKGKDEAEGKSNAHGSHSTLNQQSTFWQSQLPCEDTNGSANGNALKSSQLCSPPASSASSVMRPFSAPPSAGPSNVRLGQSPKIMPDFVQKSESIQDNLELVLYVYFVPLLISSLLEDLILKGCSSIAGSSKKCITSVPP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00687 546 Pfam Transcription factor TFIIB repeat 161 242 IPR013150 GO:0017025
Vian10g00687 546 Pfam Transcription factor TFIIB repeat 259 340 IPR013150 GO:0017025
Vian10g00687 546 SUPERFAMILY Cyclin-like 160 250 IPR036915 -
Vian10g00687 546 FunFam Transcription initiation factor IIB 259 356 - -
Vian10g00687 546 Gene3D - 159 250 - -
Vian10g00687 546 MobiDBLite consensus disorder prediction 450 470 - -
Vian10g00687 546 Gene3D - 259 355 - -
Vian10g00687 546 MobiDBLite consensus disorder prediction 450 485 - -
Vian10g00687 546 FunFam Transcription initiation factor TFIIB 159 250 - -
Vian10g00687 546 SMART cyclin_7 259 340 IPR013763 -
Vian10g00687 546 SMART cyclin_7 163 244 IPR013763 -
Vian10g00687 546 MobiDBLite consensus disorder prediction 389 425 - -
Vian10g00687 546 CDD CYCLIN_TFIIB_archaea_like_rpt2 256 342 - -
Vian10g00687 546 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 84 380 IPR000812 GO:0006352|GO:0070897
Vian10g00687 546 PRINTS Transcription initiation factor IIB signature 205 224 IPR000812 GO:0006352|GO:0070897
Vian10g00687 546 PRINTS Transcription initiation factor IIB signature 231 246 IPR000812 GO:0006352|GO:0070897
Vian10g00687 546 PRINTS Transcription initiation factor IIB signature 326 340 IPR000812 GO:0006352|GO:0070897
Vian10g00687 546 PRINTS Transcription initiation factor IIB signature 260 278 IPR000812 GO:0006352|GO:0070897
Vian10g00687 546 PRINTS Transcription initiation factor IIB signature 294 310 IPR000812 GO:0006352|GO:0070897
Vian10g00687 546 SUPERFAMILY Cyclin-like 257 355 IPR036915 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00687 K03124 - gmx:102662353 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00687 10 6590559 6598539 Vian10g00687 10 6590559 6598539 ECH