Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00676 ATGTTAACGATGGAGCCTCAAAGAAAAGCTTTGGCATTATCTTGGATCTTGATCTTCTTCCTTTCCATTTCCCTGTGTGGGGTGAAGGCATCAAGTGAAGGTCACCATGGCGAGCCTCAAGAGGGACCTGTGGTGACGAAGGATCAGAGAAGGACATTACTTGCCACTGAGTTCGGACAGATAACCGCCCTTGACATCAAGGAAGAACCAGATAAACTTCCTTACCATCTTCAGTTCATCACATTGGAGCCAAACTCGCTATTTCTTCCTGTGCTTCTACATTCAGATATGGTCTTTTATGTTCATACAGGGAGTGGAAAGCTGACTTGGGCACATGATGATGATACTGGCACGATCCCTTTACGCGAAGGAGATGTCTGTAATCTCAATGAAGGATCTGTTTTCTATATACAGAGCGACTTAGAGGCTGAGAGAAGGAAACTGAGGATCTATGCAATGTTAACCAATACAGAAGACAATACTTACAATCCATCGATCGGTGCTTACTCAAGAATCGACCAACTGGTCAAGGGCTTTGATAAGAAAATCATGCAATCAGCTTTAAAGGTACCATATGATTTGATAGAAGAAATCATCAACAAGAAAAATACCCCAGCTATAGTGCATGCGGATTCAAAGAAGACGAATATTGTCACGACACTGGAGGCTTCATTTCTTAAAAAAATTGTGGGTGTTGGGTCCAACGCTCTCGAAAAATACAACATCCTTGATCATGAACCTGACTTCAAAAATCGTTATGGTAGGAGCGTAGCAATATCCAAAACGCAACTAAAGTCATTGAAGCGAACGAACATTGGATTTCTTATGGTGTATTTGAACGAGGGATCAATACTGGGGCCTCATTGGAACCGGAAGGCATCAGAGTTGGCAGTGGCAGTAGAAGGGAAAGGCATGGTCCGAGTGGTAAACGGAAGCAGCAATGAAGGTGATACAGAAAGGCAAAGCATGAGGTTTAAGGTTAACGCGGGTGATGCTTTTCTGGTGCCTAGGTTTCATTCAATGGCTCAGATGGCATTCAACGATGAACCGTTTGTTTTTCTGGGCTTCAGCACTTCAGCGAAGGACAACCATCCTCAATTTTTGACGGGAAAGGGATCTGTGCTTCACAATCTGGACAAGCATATACTGGCTACCTCTTTGGGTGTGAGTGACAGAACCGTTGACGAACTTCGGCGTTCTCCCAGAGATTCCATCATTTTCGCGTGCTCTACCTGCGCAGAGGAAGAGGAGAGTACAATGAAGGAGGAAGAAAGGGAGAGGAAGAGAGAGGAGGAGGAGAGAAAAAGAGAAGAGGAGGAGGAGAGAAAAAGAGAAGAGGAGGAGGAGAGAAAAAGAGAAGAGGAGGAGGAGAGAAAAAGAGAAGAGGAGGAGGAAGACAGGAAGAGAGAGAGAAAGAGGGAGAGAGAGGAAGAGGAAGCCAAAAAACAACAAGAAGAGAGGGAAAAGAAGCGTGAGGAGGAGGAAGAGAGGGAGCAAGAAGAAGGTGGGAGAGAGAAAAAAAGGGAAAGGGAAGAAGAGAGGGAGAGGGAGGAAGAAGAAGCTAAAAGGCAACAGGAGAAGAGGGAAAAGAAAAGAGAGAAAGAAAAGGGAGAAGAAGCAGAAGAAGCCAAGAAAGAGCAAGAAAAGAGGGAAATGAAGAGACAAGAGGAGGAACAAAGCGAAGGAAAAGAAGAAGAAGATCCGACATGGTGGGAGAGACCGAGGAGAGAGAAGGGGAAAGGATCAGAAGAAGAAGAAGTAGCAGAACAGGAGCAAGAACAAGCTAGAAGAGAGCAGGAAAAGAGAGAAAAGAAGCGACAGGAGGAGGAACAAAGCGAAGGAAAAGAAGAAGAAGATCCGACATGGTGGGAGAGACCGAGGAGAGAGAAGGGGAAAGGATCAGGAGAAGAAGAAGTAGCAGAACAGGAGCAAGAACAAGCCAAAAGACAACAAGAAGAAAGGGAGAAAAAAAGAGAGCATGAGAGTGATCCTGATCACTTTGAAGGAAGGAGAGCTTTGAAAGTCAGAAACCTTTGA 2037 0.4497 MLTMEPQRKALALSWILIFFLSISLCGVKASSEGHHGEPQEGPVVTKDQRRTLLATEFGQITALDIKEEPDKLPYHLQFITLEPNSLFLPVLLHSDMVFYVHTGSGKLTWAHDDDTGTIPLREGDVCNLNEGSVFYIQSDLEAERRKLRIYAMLTNTEDNTYNPSIGAYSRIDQLVKGFDKKIMQSALKVPYDLIEEIINKKNTPAIVHADSKKTNIVTTLEASFLKKIVGVGSNALEKYNILDHEPDFKNRYGRSVAISKTQLKSLKRTNIGFLMVYLNEGSILGPHWNRKASELAVAVEGKGMVRVVNGSSNEGDTERQSMRFKVNAGDAFLVPRFHSMAQMAFNDEPFVFLGFSTSAKDNHPQFLTGKGSVLHNLDKHILATSLGVSDRTVDELRRSPRDSIIFACSTCAEEEESTMKEEERERKREEEERKREEEEERKREEEEERKREEEEERKREEEEEDRKRERKREREEEEAKKQQEEREKKREEEEEREQEEGGREKKREREEEREREEEEAKRQQEKREKKREKEKGEEAEEAKKEQEKREMKRQEEEQSEGKEEEDPTWWERPRREKGKGSEEEEVAEQEQEQARREQEKREKKRQEEEQSEGKEEEDPTWWERPRREKGKGSGEEEVAEQEQEQAKRQQEEREKKREHESDPDHFEGRRALKVRNL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00676 678 Pfam Cupin 240 394 IPR006045 -
Vian10g00676 678 Gene3D Jelly Rolls 233 412 IPR014710 -
Vian10g00676 678 MobiDBLite consensus disorder prediction 411 678 - -
Vian10g00676 678 Coils Coil 637 662 - -
Vian10g00676 678 Coils Coil 413 566 - -
Vian10g00676 678 SMART Cupin_1_3 240 395 IPR006045 -
Vian10g00676 678 CDD cupin_7S_vicilin-like_N 53 214 - -
Vian10g00676 678 Gene3D Jelly Rolls 37 221 IPR014710 -
Vian10g00676 678 PANTHER OS03G0336100 PROTEIN-RELATED 14 412 - -
Vian10g00676 678 SUPERFAMILY RmlC-like cupins 7 400 IPR011051 -
Vian10g00676 678 Coils Coil 580 618 - -
Vian10g00676 678 CDD cupin_7S_vicilin-like_C 247 404 - -
Vian10g00676 678 MobiDBLite consensus disorder prediction 415 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00676 Vian-Chr10 6520531 6523055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00676 9 420 Miscellaneous Gene Families AT2G18540 40.774 4.78e-102 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00676 - - var:108334794 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00676 10 6520531 6523055 Vian10g00676 10 6520531 6523055 ECH