Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00648 ATGAGGATGCACTTGAGGTCGTTTTTTTGCGAGGTTAACCTGTTGAACAGGTTAAGCTCGCAAGTGCAAGCTCGTTCATATGTCCGTCGTCGTGAACCGTTTCCCACAAAAGTTGCTCACTACCTCAAACGTGCCAAACTCATTGACTCCATTAGACTCACTCTACGCTCTAAAACCCCCGACTCCTCTCTTCCCTCTCTCATAAACCACCGTCTTTTTGACTCTTTCGTGCTCACTCATGCCATTCGTTCTTCCCCCTCTGTAGATTCCGCTCTTTCCCTTGTTCATGCCCTTGAAAAAAATTCCAATTTTTCCCATACCCACCACACGCTCAATGCACTTGCAACTGTTCTTGCCAAGGCTGGTAGATGCTCCGTGCTCAAATCCCTCATTGATGCTATCCAAGCCAACCGATTCGGCACCATTCGGATCAGCTTCATGAATCTCATGCAGTGGCATGCTGCAGCTGGGGACCTGGACACTGTCCTTCAAGTGTGGGAACAGTATACACTCGAGAGCAACCATCTCTGTACTGAATCATATAATATTGTTATGGCTCTCTATGCTCAAATGGGTAAGGACTCGCAGGCTGTACGAGTTTTTCAGGGGATGATTGATGAAGGGTCTCTGCCGAATTGCAGGAGCTTCACTATAATAATCGAGCACCTTGTGAAGTCCCGGAAGTTATCGGAAGCAATGGAGGTTTTTAATCTGTTGCCTTTGATGAGGGTCAAACGCACTTTGAAGCAGTTCTCGGTTCTGCTAGAGGGTTTTGTAGGTAGCAAATGGTTTGATGAAGTGAAAATTTTAGTTGATGAAATGCAGGTTGATGGAATACTTCCTAGTAGAGGCGTGAGTTTGTTGCTGCAGCAGATGAAAGAGGAAGGAATTCTTGAAGACAAGGAGCAATTACTGCGAGGAATTTTGCCAGATGAGAGAATCAGGAGTGTAAGTTATTCTGTTGATGGTGGTGACGGGGATGATGATGAGAATGAGAATGAGGTTGAAGACGAGAATATAAATGATGCTAGTCAATGTGATCTTGTTGATGGAGTTCATTTAAAACCATGGCTGGACCCACGGGCTTTGGCAAGTGCCTTGCGGAATTGGAGTCCTGATGAGGTAGCAGCACTAGAGGGTCCAAACTTTGTGTGGACAACAGGGTTGGTCTGCAGGATGCTTAGAAATTTCAAAACACCAGAAGCTGCATGGAGTTTCTTCTGCTGGGTTGCTAATCAAAGTGGATTTACTCATGACATATACACCGTACAAAGAATCATGACCCTACTGGCACGCCATGGACGGAAGGAATCTTTTAATACACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTCAGCACCATCAGGCTGATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTATGAAGGTTTTCAATGACGACCGAATACTTTGCGGTCCCATATCAAATGTAAACCTGATGCTTCTGTATTCGTCTCTTCTAAGAACATTGACTAAGTGTGGAAGAAACTCCGATGCCTTGGATATGCTTGATGACATGATTTTAAATGGTATTTGCCCAGATATCCAGACATTTTCAGGCCTAATGCTATACTTTTCACAGCTTGGGGACATAAAAACAGTACAAAAGCTCTTTGCAATGATTAGGCAGAGTGGTCTTGAGCCTGATGCTTATTTATTTAAGGTATTAATCCAAGGTTATTGCAAGTCAAATAAAGCTGCACTAGCATGGAGGCTCTTTGAAGACATGAAGAATTCTGGTTTAGTGCCTGACTCTGCCACCAAAGAGTTGCTAGTAAAGAGTCTCTGGAAAGAGGGGAGACGAAGAGAGGCTGCAGCAGTAGAAGAGAGTTGTGAGGAAATAAATAAGGTTCTTCCACTTGCATTGCAGGGTCATGAATGGACTGTCAGCTCTGCAGATCTCACAAGAGTTCTTCGAATTTACTCTAATACATCAATTTTAAGAGATGCTTACTCCAAAAGAAAGAGTGTAAACTGCAGCTAA 2025 0.4375 MRMHLRSFFCEVNLLNRLSSQVQARSYVRRREPFPTKVAHYLKRAKLIDSIRLTLRSKTPDSSLPSLINHRLFDSFVLTHAIRSSPSVDSALSLVHALEKNSNFSHTHHTLNALATVLAKAGRCSVLKSLIDAIQANRFGTIRISFMNLMQWHAAAGDLDTVLQVWEQYTLESNHLCTESYNIVMALYAQMGKDSQAVRVFQGMIDEGSLPNCRSFTIIIEHLVKSRKLSEAMEVFNLLPLMRVKRTLKQFSVLLEGFVGSKWFDEVKILVDEMQVDGILPSRGVSLLLQQMKEEGILEDKEQLLRGILPDERIRSVSYSVDGGDGDDDENENEVEDENINDASQCDLVDGVHLKPWLDPRALASALRNWSPDEVAALEGPNFVWTTGLVCRMLRNFKTPEAAWSFFCWVANQSGFTHDIYTVQRIMTLLARHGRKESFNTLISKIRMEGMRLPFSTIRLIIDFYGISKNADAAMKVFNDDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDDMILNGICPDIQTFSGLMLYFSQLGDIKTVQKLFAMIRQSGLEPDAYLFKVLIQGYCKSNKAALAWRLFEDMKNSGLVPDSATKELLVKSLWKEGRRREAAAVEESCEEINKVLPLALQGHEWTVSSADLTRVLRIYSNTSILRDAYSKRKSVNCS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00648 674 Gene3D Tetratricopeptide repeat domain 492 659 IPR011990 GO:0005515
Vian10g00648 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Vian10g00648 674 NCBIfam pentatricopeptide repeat 567 599 IPR002885 -
Vian10g00648 674 NCBIfam pentatricopeptide repeat 497 529 IPR002885 -
Vian10g00648 674 NCBIfam pentatricopeptide repeat 180 213 IPR002885 -
Vian10g00648 674 Pfam PPR repeat family 562 609 IPR002885 -
Vian10g00648 674 Gene3D Tetratricopeptide repeat domain 382 485 IPR011990 GO:0005515
Vian10g00648 674 Gene3D Tetratricopeptide repeat domain 57 170 IPR011990 GO:0005515
Vian10g00648 674 Gene3D Tetratricopeptide repeat domain 171 306 IPR011990 GO:0005515
Vian10g00648 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Vian10g00648 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Vian10g00648 674 PANTHER OS01G0167750 PROTEIN 3 658 IPR044175 -
Vian10g00648 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Vian10g00648 674 Pfam PPR repeat 497 525 IPR002885 -
Vian10g00648 674 Pfam PPR repeat 215 238 IPR002885 -
Vian10g00648 674 Pfam PPR repeat 180 208 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00648 Vian-Chr10 6235114 6243409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00648 415 645 Glycosyltransferase AT1G05670 27.468 9.01e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00648 - - gmx:100779372 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00648 10 6235114 6243409 Vian10g00648 10 6235114 6243409 ECH