Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00631 ATGGGAACGATGACAGGATTGTTAGAGGAAGGAAGCTCCCATGGAAAAAAGTATGGAAAGTTAAAGAAAGACGAATTCGATGGTTATAACTCTGATAACCATCCAAGAATAAATAGCCCTGTTACGTTGGACGCACCTCATTTGGATCCTCAAATGGCAATAGATCACACTGCTTACGACCCTTCCCTTTCTCCTTTATCGAAATCGCCATGGTCCTCTCACATGAACGAAGAAGGTTCTACCTCCAACGACAACGAGGCTCTCATAGGGTCCTTAGTCCGAGAAGAGGGTCACATATACTCCCTCGCTGCAACCAAGGAGTTGTTATACACGGGTTCAGAGAGTAAAAATATTCGCGTGTGGAAGAACCAAAAGGAGTTCACGGGGTTCAAATGCCACAGCGGCTTGGTGAAAGCGATTGTGATCGCCGGGGAAAAAATCCTCACGGGACACCAAGATGGAAGGATAAGAGTGTGGAAAGTTTCCGGGAAAAACGACCAACAACACAAGCGTGTGGCAACGTTGCCCACGTTAAGAAACTACATAAAATGTTCGGTGAAACCAAGTAATTACGTGGAAGTGAAACGACACCGTAACGTCTTGTGGATTAAACACTACGACGCCATTTCATGTCTGGCCGTGACAGAGGATCATTGTTATATATACTCTGCCTCGTGGGATAGAACTTTCAAAGTGTGGCGAACGTCCAATTTCAAGTGTCTAGAGTCTGTGATAGCCCATGACGATGCTGTTAATGCGCTTGTTGTGGGGTTGGACGACTTGGTTTTCACGGGCTCGGCTGACGGCTCGGTTAAGATTTGGCGGCGGGAGGTTCACGGGAAAAGGACAAAACATTTTTTCTCGCACACGTTGTTGAAGCAAGAGTGTGCGGTGACGGCGCTGACGATGAGCGGCGAGGGGAATTTTTTATACGCTGGTTCTTCCGATGGGCTGGTGAATTATTGGGTGAGAGAGACAAATTGGGAGCACAGGGGCACATTAAGGGGACACAAGTTGGCCATTTTGTGTTTGGCGGCTGCAGGAAGTTTGGTCTTCAGTGGGTCTGCTGACATGTCCATATGCGTGTGGAAGAGATCACTGAGTCAGGAGCACACGTGTCTTAATGTTTTGTCCGGCCACTGTGGCCCGGTTAAGTGTCTGGCGGCGGAGAGGGATCTCGACGGCATGTGCAACGAGCGACGGTGGATTTTGTACAGTGGCAGTTTGGATAAGTCCGTTAAGATGTGGAAGGTCTCCGAGAATGCAACTGCACAACACAACCACCAAGCACCACGGCAGAGTGTTGATATCTTCCCCATAGTTTCATCATTGAAGAGAGTGGGGTCCAAGAGATTCTAG 1359 0.4842 MGTMTGLLEEGSSHGKKYGKLKKDEFDGYNSDNHPRINSPVTLDAPHLDPQMAIDHTAYDPSLSPLSKSPWSSHMNEEGSTSNDNEALIGSLVREEGHIYSLAATKELLYTGSESKNIRVWKNQKEFTGFKCHSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNDQQHKRVATLPTLRNYIKCSVKPSNYVEVKRHRNVLWIKHYDAISCLAVTEDHCYIYSASWDRTFKVWRTSNFKCLESVIAHDDAVNALVVGLDDLVFTGSADGSVKIWRREVHGKRTKHFFSHTLLKQECAVTALTMSGEGNFLYAGSSDGLVNYWVRETNWEHRGTLRGHKLAILCLAAAGSLVFSGSADMSICVWKRSLSQEHTCLNVLSGHCGPVKCLAAERDLDGMCNERRWILYSGSLDKSVKMWKVSENATAQHNHQAPRQSVDIFPIVSSLKRVGSKRF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00631 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 274 - -
Vian10g00631 452 MobiDBLite consensus disorder prediction 1 20 - -
Vian10g00631 452 MobiDBLite consensus disorder prediction 65 84 - -
Vian10g00631 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 169 IPR001680 GO:0005515
Vian10g00631 452 PRINTS G protein beta WD-40 repeat signature 147 161 IPR020472 -
Vian10g00631 452 PRINTS G protein beta WD-40 repeat signature 262 276 IPR020472 -
Vian10g00631 452 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Vian10g00631 452 SMART WD40_4 196 234 IPR001680 GO:0005515
Vian10g00631 452 SMART WD40_4 327 364 IPR001680 GO:0005515
Vian10g00631 452 SMART WD40_4 85 122 IPR001680 GO:0005515
Vian10g00631 452 SMART WD40_4 123 160 IPR001680 GO:0005515
Vian10g00631 452 SMART WD40_4 237 275 IPR001680 GO:0005515
Vian10g00631 452 SMART WD40_4 279 323 IPR001680 GO:0005515
Vian10g00631 452 SMART WD40_4 370 417 IPR001680 GO:0005515
Vian10g00631 452 FunFam BnaA09g28200D protein 192 279 - -
Vian10g00631 452 SUPERFAMILY WD40 repeat-like 95 426 IPR036322 GO:0005515
Vian10g00631 452 CDD WD40 96 417 - -
Vian10g00631 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 322 IPR001680 GO:0005515
Vian10g00631 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 243 IPR001680 GO:0005515
Vian10g00631 452 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 61 422 IPR045182 -
Vian10g00631 452 Gene3D - 80 197 IPR015943 GO:0005515
Vian10g00631 452 Gene3D - 198 443 IPR015943 GO:0005515
Vian10g00631 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 274 IPR001680 GO:0005515
Vian10g00631 452 Pfam WD domain, G-beta repeat 205 233 IPR001680 GO:0005515
Vian10g00631 452 Pfam WD domain, G-beta repeat 330 364 IPR001680 GO:0005515
Vian10g00631 452 Pfam WD domain, G-beta repeat 372 417 IPR001680 GO:0005515
Vian10g00631 452 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Vian10g00631 452 Pfam WD domain, G-beta repeat 288 322 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00631 Vian-Chr10 6027738 6029096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00631 241 439 Miscellaneous Gene Families AT5G08390 25.854 2.18e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00631 - - gmx:100778593 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00631 10 6027738 6029096 Vian10g00631 10 6027738 6029096 ECH