Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00615 ATGGTCTCCGAATCCGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGGAGTTCCGACCTCAACACCACCACCACCGCCACCGTCCGCCGCCAGTTGGAGGCTGATTTCGGTATTGATTTATCCCACCGCAAGGCATTCATTAGGGAACAGGTCGACTTGTTCCTCCAGACCGAGCACAACCAACCGCAACAGCAACAACAAGACGACGACGTACCAAAAGACGAAGGAGAGGAAGAAGAAGAAGCCCTTAATAATCCCGACCAAAGTGAATCATCCGATTCCAAGGAAGAATCGGAAGAAGACGACGATAACGACGAAGAGGAACGAGATAAACCTAAGCATGCCAAAAATGCCCAGAAGAATAAAGGACGATCTAACAAGTTAGGTGATGAGGTAGCAAAGAAAAGAGGTGGTGGATTTTGCAAATTGTGTAGCCTGTCTCCACAACTTCAGGAATTCATGGGTGCTCCAGAAATGGCCAGGACTGAGGTTGTTAAGCAAATATGGGCCTACATTAGGGAGAGAAATTTGCAAGACCCAAATAATAGACGGAATATAATTTGCGATGATCGAATGCGGGCCCTTTTCAATGTCAACTCCATCAACATGTTCCAAATGAATAAAGTATTGTCGAAGCATATCTGGCCGTTGGATTCCGATGATGTTGTCCAGGTGAAGTCCACACCAAAGGAGAAGCATAAGAAGCAAGAGAGAGATGATGATTCAGATGAGCCAAAAAGAAAGGAAAAACGGCAGAAGGGAGCAGGGAAATCAGGTTTTCTTGCTCCTCTTCAGCTATCAGATGCCCTTGTAAACTTCCTTGGTACCGGAGAAAGTGAGTTATCAAGAACTGATGTTATAAAAAGAATGTGGGATTACATTAAAGGAAACAACCTTCAGGATCCTTCTAACAAGAGGCAAATAATATGTGACGAGAAGCTGAAAGAACTCTTTGACGTGGACTCCTTCAATGGCTTCACTGTTACAAAACTGCTGGCACCACATTTTATAAAGACGCAGCAGTGA 1026 0.4542 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSHRKAFIREQVDLFLQTEHNQPQQQQQDDDVPKDEGEEEEEALNNPDQSESSDSKEESEEDDDNDEEERDKPKHAKNAQKNKGRSNKLGDEVAKKRGGGFCKLCSLSPQLQEFMGAPEMARTEVVKQIWAYIRERNLQDPNNRRNIICDDRMRALFNVNSINMFQMNKVLSKHIWPLDSDDVVQVKSTPKEKHKKQERDDDSDEPKRKEKRQKGAGKSGFLAPLQLSDALVNFLGTGESELSRTDVIKRMWDYIKGNNLQDPSNKRQIICDEKLKELFDVDSFNGFTVTKLLAPHFIKTQQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00615 341 Pfam DEK C terminal domain 2 55 IPR014876 -
Vian10g00615 341 MobiDBLite consensus disorder prediction 71 86 - -
Vian10g00615 341 SUPERFAMILY SWIB/MDM2 domain 136 218 IPR036885 -
Vian10g00615 341 SUPERFAMILY SWIB/MDM2 domain 257 341 IPR036885 -
Vian10g00615 341 Pfam SWIB/MDM2 domain 263 336 IPR003121 -
Vian10g00615 341 Pfam SWIB/MDM2 domain 143 214 IPR003121 -
Vian10g00615 341 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Vian10g00615 341 SUPERFAMILY DEK C-terminal domain 3 56 - -
Vian10g00615 341 CDD SWIB-MDM2_like 264 336 - -
Vian10g00615 341 SMART swib_2 260 341 IPR019835 -
Vian10g00615 341 SMART swib_2 140 219 IPR019835 -
Vian10g00615 341 FunFam Upstream activation factor subunit 250 341 - -
Vian10g00615 341 Gene3D SWIB/MDM2 domain 134 222 IPR036885 -
Vian10g00615 341 ProSiteProfiles SWIB/MDM2 domain profile. 259 338 IPR003121 -
Vian10g00615 341 Gene3D - 1 59 - -
Vian10g00615 341 MobiDBLite consensus disorder prediction 58 132 - -
Vian10g00615 341 CDD SWIB-MDM2_like 144 214 - -
Vian10g00615 341 Gene3D SWIB/MDM2 domain 254 341 IPR036885 -
Vian10g00615 341 MobiDBLite consensus disorder prediction 225 257 - -
Vian10g00615 341 ProSiteProfiles SWIB/MDM2 domain profile. 139 216 IPR003121 -
Vian10g00615 341 MobiDBLite consensus disorder prediction 225 255 - -
Vian10g00615 341 FunFam Upstream activation factor subunit 134 222 - -
Vian10g00615 341 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00615 Vian-Chr10 5886084 5890415 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian10g00615 SWIB 2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00615 K15223 - gmx:100786835 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00615 10 5886084 5890415 Vian10g00615 10 5886084 5890415 ECH