Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00458 ATGGCACTCAGGATGTGGGCTTCTTCCACTGCCAATGCACTCAAACTCTCTTCTGCCTCCAGACCCCATCTTCTTCCTCCTTTTTCTTTCTCCAGATGCTTATCTACTGGTATTTACACTTCTTTCTCCGCATTCATATCTCTATCAAAATATCATCTTCACACTCTTTTTGCTTCTTTCACAGTCTTGGATGGACTCAAGTACGCAGAATCACACGAGTGGGTCAAGCACGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCCCAGGGCCATCTTGGAGAGGTTGTGTTTGTGGAGCTGCCAGAGGCAGGTGTTACAGTGTCCAAGAGTTCTGGGTTTGGAGCTGTTGAAAGTGTGAAAGCATCAAGTGATATAAACTCTCCAATATCAGGGGAGGTTGTTGAGGTTAACAAAAAGCTCACAGAAACGCCTGGCCTGGTAAACTCAAGCCCATACGAAGATGGATGGATGATCAAAGTAAAGCCAAGTGATCCTTCTGAGTTAGAGTCGTTGTTGGGTCCAAAGGAATACACAAAATTTTGTGAGGAAGAAGATGCTAGCCATTGA 573 0.4555 MALRMWASSTANALKLSSASRPHLLPPFSFSRCLSTGIYTSFSAFISLSKYHLHTLFASFTVLDGLKYAESHEWVKHEGSVATIGITDHAQGHLGEVVFVELPEAGVTVSKSSGFGAVESVKASSDINSPISGEVVEVNKKLTETPGLVNSSPYEDGWMIKVKPSDPSELESLLGPKEYTKFCEEEDASH 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00458 190 ProSiteProfiles Biotinyl/lipoyl domain profile. 81 163 IPR000089 -
Vian10g00458 190 NCBIfam glycine cleavage system protein GcvH 64 187 IPR017453 GO:0005960|GO:0019464
Vian10g00458 190 SUPERFAMILY Single hybrid motif 62 185 IPR011053 -
Vian10g00458 190 Pfam Glycine cleavage H-protein 66 185 IPR033753 -
Vian10g00458 190 CDD GCS_H 68 162 IPR033753 -
Vian10g00458 190 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 4 187 IPR002930 GO:0005960|GO:0019464
Vian10g00458 190 FunFam Glycine cleavage system H protein 60 186 - -
Vian10g00458 190 Gene3D - 60 190 - -
Vian10g00458 190 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 106 135 IPR003016 -
Vian10g00458 190 Hamap Glycine cleavage system H protein [gcvH]. 63 184 IPR002930 GO:0005960|GO:0019464
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00458 Vian-Chr10 4224227 4225385 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00458 K02437 - gmx:100785811 300.827