Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00441 ATGTCAAGAACAGTGGAAGTAACAGTTTTATCCGCGGAGAATCTCCAAATGAACAAAAAACCCGTAAGAGGAAACACATTTGTGACAGTTCACTCCGACGCCGGCACCGACGCAGGTGCTGTCACGAAAGTGGATTCAGAGGGTGGAAGCTACCCTTCGTGGAATGACAAGGTTGTGGTGAACGTGCCGTTGCATGCAAGGTTCATAACGGTGGAGGTGAAGTCCAAAACGACGTCGTCGTCGTCGTCGTTGACGGGGTCTAACAGTGTCGGCGTTGCACGAATACCGGTTTCTGATTTCATTGGAGGGTACGTGCCAGAAAATCAGCTGCATTTCTTGAGCTACAGGTTGTGGGACGGTAACGTTAAGAGAAATGGGGTTATAAATATTTCGGTGAGGGTGAAAGTATCGGAACGTTCCTCTTGTAGTTCCAATTCTATGCCATTTGCGGCGGTAACTGGGATGCCGGTGGCCGGTAATGGCTCCACCGGAGTTGTCACGGGGATTCCAGCTCTTTGGTTAAACTACCAAAGAAATCTCTGA 543 0.4936 MSRTVEVTVLSAENLQMNKKPVRGNTFVTVHSDAGTDAGAVTKVDSEGGSYPSWNDKVVVNVPLHARFITVEVKSKTTSSSSSLTGSNSVGVARIPVSDFIGGYVPENQLHFLSYRLWDGNVKRNGVINISVRVKVSERSSCSSNSMPFAAVTGMPVAGNGSTGVVTGIPALWLNYQRNL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00441 180 CDD C2_SRC2_like 4 130 IPR044750 GO:0006952
Vian10g00441 180 SMART C2_3c 4 109 IPR000008 -
Vian10g00441 180 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Vian10g00441 180 PANTHER INGRESSION PROTEIN FIC1 2 146 - -
Vian10g00441 180 Pfam C2 domain 4 105 IPR000008 -
Vian10g00441 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 134 IPR035892 -
Vian10g00441 180 Gene3D C2 domain 3 135 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00441 Vian-Chr10 4077743 4078285 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00441 - - gmx:100500298 281.567