Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00437 ATGGACTCGCAACAGAGCAATCTATTCGACACCGCTTCGCAGCCCGACACCGGCAACGACGCCTACACCTTTCTTGAATTTAACACACAGGGCGAGGATTTCGACTACCCTGAATTCCGCGACCCGATTAGGTCGCCGGTAGCATGGCCAACTCCGTCCGATTCGCTTGCGGACACGTCGGAGCGCGGCGCCGTTGGGGGACCTGGCTCCGATCACCAGTCAGATGCCTCGCCTGTCTCCGCGGCTCCTGGAAGCGCTACCAAGGGCGGCCGGTCGGGGAACGGCGGTGGGCACAGCAGCCAGATGGTGGATGCGCTTGCCGCGGGGATGAGCGGGTTGAATTTTGAGGACACTGGGGATGATGATAACTATGAGTATGGTAAAGGAGATTTCACTGAACACGCTTGCCGTTATTGCGGGGTTTCCAATCCCGCTTGTGTTGTGAGGTGCAATGTGCCTTCGTGTCGTAAGTGGTTCTGTAATTCACGGGGGAACACTTCTGGATCACATATTGTCAATCACCTGGTTCGGGCTAAACACAAGGAAGTCTGTCTACACAAAGATAGTCCGTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGATGTCGCAATGTTTTTCTCCTTGGATTTATTTCTGCAAAGACGGAAAGTGTAGTGGTCTTACTATGTCGTGAACCTTGCTTGAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGTCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAGGAGCAGTTAAGAGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTGGAGGAATTGTGGAAGACAAATCCTGATGCTTCCTTTGAGGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATCAAGCTTGAAGCTGATTATGACAAGATGATGAAAGAATCACAAAGTAAGGACAATGTCACCATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCCTATTTTGTATTTCCAAAGGAGGATAATGAGTTGCGGCTTGTACCTGGTGATGAGTTACGACTCCGTTATTCTGGTGATGCTGCTCATCCTGCATGGCAGTCAGTGGGTCATGTGATTAAGCTAACTGCACAAGAGGAGGTTGCATTGGAGCTCCGTGCTAGTCAGGGTGTTCCTGTTGATGTTAACCATGGGTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGGATGCAGGGAGCTATGAAAACCTTTGCTGTGGATGAGACAAGTGTTAGTGGGTATATTTATCATCACTTACTGGGTCATGAAGTTGAGGTTCAGATGGTGCGAAATGCTTTACCTCGTCGCTTTGGTGCACCTGGCCTTCCTGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATAAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTTGTATATCACATGGCCAAGCAAGGTCAGGGACAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTGGACCAGTTAGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAATCAAGGGAAGCTGTCAGTTCCCCTGTTGAGCATTTAACTCTCCACTATCAGGTTCGACATCTTGACACGTCTGACAAGAGTGAACTTCATAAGTTGCAACAACTGAAGGATGAGCAAGGTGAACTTTCCAGCAGTGATGAGAAAAAGTACAAAGCTCTTAAGCGAGCAACTGAGAGGGAGATTTCTCAGAGTGCAGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTAGCAAATTTTAGGTTCCGTCAGGTGCTTATTGATGAGTCTACTCAAGCAACTGAACCTGAGTGCCTCATACCTTTGGTCCTAGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCTCGTGCTGGATTAGCTCAGTCACTTTTTGAGAGACTTGTTCTACTTGGTGTTAAGCCAATTAGGTTGCAGGTTCAGTACCGAATGCATCCATGTCTTTCAGAATTTCCCTCAAACAGCTTCTATGAAGGCACCCTGCAGAATGGAGTCACTGTTAATGAAAGGCAATCATCAGGAATCGATTTTCCATGGCCAGTTCCAAACCGTCCTATGTTTTTCTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTAACTACTTTCTTAAAAAGTGGTGTGGTTCCAAGTCAGATTGGTGTGATAACACCTTATGAAGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAGATTGAGGTTGCTAGTGTTGATTCTTTTCAAGGAAGGGAAAAAGATTACATAATTCTTTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGGTTCCTGAATGATCCCAGGAGGCTTAATGTTGCCTTGACTCGTGCAAGATATGGTATTGTTATTTTGGGTAACCCTAAAGTTTTGAGCAAGCAGCCTCTGTGGAATAGTTTATTGACTCACTACAAGGAACACGAGTGCTTAGTTGAAGGGCCTTTAAATAATTTGAAGCAGAGTATGGTTCAGTTTCAGAAACCCAAGAAGATTTATAATGAGCGAAGGCTTTTTTACGGAGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTTCTGTTGGATCTGGAGCTGGAACAAGTTCAGATCGTCGGAGTAGTCGAGGAAGGGGATCTTATATACCTCCTGGTCCACCAAATGGAACTCATAAGCCTGGAGTGCATCCTGCTGGATATCCTGTGCCAAGAGTTCCCTTGCCTCCCTTCCATGGTGGTCCCCAATCTCAACCATATGCCATTCCTTCACGTGGGGCCGTTCATGGACCTGTTGGGGCAGTTCCTCATGTTCCATCTCCTGGGAGTCGAGGCTTTGGGGCTGGTAGAGGTAATTCTGGTGCTCCAATTGGCAATCATCTTCCACACCAACAAGGCACCCAACAGCCGATTGGGAATATTGGATCTACCTTTAACTTCCCTACTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGTGGTCCTTTATCTCAACCTGGGTTTGCAAACAATATGCCAGTTCAAGGGGCTGGCCAGTCATTTCGAGACCAATTTTCTATGCCTGGAATGTCCCAGGACTTTTTGGGCGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTACAATGTCACTGATTTCTCTACTCAGGCTTCTCAAAGTGGATATGCTGTTGATTTTTCCACACAAGGAGCACAAGGTGGATTTCCTGGGAATTTTCTTAACCAGAATTCTCAAGCTGGCTATTCTCGTTTTGGTTCTGGAAACGACTTTATGTCCCAGGACTACATGGGCCATGGTTCTCAAGGTCTTTTTACTCAGGTGGGATTCAATGACCCGTTGCAAGATGATTCAACTCAAAGCCATTTCGGTGTGGCTAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTCTACTCCCAACCTTTTGCTCACTACAACACACAGCCGCTTAACATTCAGGCTTCGCAACAACAGTCTCAGGCTCAGAATTCCCAAAATCAGAAAATCCACTATAACGGTTGA 3807 0.4578 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADTSERGAVGGPGSDHQSDASPVSAAPGSATKGGRSGNGGGHSSQMVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFPTLENPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFSMPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDFSTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFNDPLQDDSTQSHFGVANANPLQSQMNSLYSQPFAHYNTQPLNIQASQQQSQAQNSQNQKIHYNG 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00437 1268 PANTHER DNA2/NAM7 HELICASE FAMILY 249 1102 IPR045055 -
Vian10g00437 1268 MobiDBLite consensus disorder prediction 1053 1090 - -
Vian10g00437 1268 Gene3D - 340 428 - -
Vian10g00437 1268 Pfam AAA domain 697 892 IPR041679 -
Vian10g00437 1268 Gene3D - 448 718 IPR027417 -
Vian10g00437 1268 Pfam RNA helicase UPF1, 1B domain 339 428 IPR040812 -
Vian10g00437 1268 Pfam AAA domain 584 687 IPR041677 GO:0004386
Vian10g00437 1268 FunFam Regulator of nonsense transcripts 1 719 930 - -
Vian10g00437 1268 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 493 625 IPR014001 -
Vian10g00437 1268 MobiDBLite consensus disorder prediction 995 1011 - -
Vian10g00437 1268 Pfam RNA helicase (UPF2 interacting domain) 134 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vian10g00437 1268 MobiDBLite consensus disorder prediction 1 101 - -
Vian10g00437 1268 FunFam regulator of nonsense transcripts 1 homolog 340 428 - -
Vian10g00437 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 943 IPR027417 -
Vian10g00437 1268 MobiDBLite consensus disorder prediction 953 1090 - -
Vian10g00437 1268 MobiDBLite consensus disorder prediction 1 26 - -
Vian10g00437 1268 Gene3D - 570 622 - -
Vian10g00437 1268 Gene3D - 719 930 IPR027417 -
Vian10g00437 1268 CDD ZBD_UPF1-like 135 257 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Vian10g00437 1268 CDD DEXXQc_UPF1 484 719 - -
Vian10g00437 1268 Pfam Type III restriction enzyme, res subunit 490 552 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vian10g00437 1268 CDD 1B_UPF1-like 340 427 IPR040812 -
Vian10g00437 1268 MobiDBLite consensus disorder prediction 957 972 - -
Vian10g00437 1268 CDD SF1_C_Upf1 720 909 IPR047187 -
Vian10g00437 1268 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 128 287 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00437 Vian-Chr10 4029954 4045516 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00437 K14326 - gmx:100795594 2472.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00437 10 4029954 4045516 Vian10g00437 10 4029954 4045516 ECH