Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00341 ATGGGTAAGGATCTGAGCGATGAGCAGGTTTCTGCGATGAAGGAGGCTTTCTCTCTATTCGACACAGACGGCGACGGTCGGATCGCGCCTTCGGAGCTCGGGATCCTGATGCGGTCACTCGGAGGGAACCCGACCCAGGCCCAACTAAAGTCCATCGTAGCCGAAGAGAATCTCACCGCCCCATTCGACTTCCCTCGATTCCTTGATCTCATGGCCAAACACATGAAACCCGAACCCTTCGATCGCCAACTCCGTGACGCCTTCAAGGTCCTCGACAAGGATTCCACCGGATTCGTCTCCGTTTCGGAGCTCCGACACATCCTCACCAACATCGGCGAGAAGCTGGAGCCCTCCGAGTTCGACGAGTGGATCAGGGAAGTCGACGTCGGCTCCGATGGCAAGATCCGCTACGAGGATTTCATTGCCAGAATGGTCGCTAAGTAG 444 0.5676 MGKDLSDEQVSAMKEAFSLFDTDGDGRIAPSELGILMRSLGGNPTQAQLKSIVAEENLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDSTGFVSVSELRHILTNIGEKLEPSEFDEWIREVDVGSDGKIRYEDFIARMVAK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00341 147 Gene3D - 3 80 - -
Vian10g00341 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Vian10g00341 147 FunFam probable calcium-binding protein CML13 3 80 - -
Vian10g00341 147 FunFam Myosin light chain 1 81 145 - -
Vian10g00341 147 PANTHER MYOSIN LIGHT CHAIN 1, 3 4 145 - -
Vian10g00341 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Vian10g00341 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Vian10g00341 147 Gene3D - 81 145 - -
Vian10g00341 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Vian10g00341 147 SMART efh_1 12 40 IPR002048 GO:0005509
Vian10g00341 147 SMART efh_1 83 111 IPR002048 GO:0005509
Vian10g00341 147 SMART efh_1 119 147 IPR002048 GO:0005509
Vian10g00341 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Vian10g00341 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Vian10g00341 147 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Vian10g00341 147 CDD EFh 83 144 IPR002048 GO:0005509
Vian10g00341 147 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00341 Vian-Chr10 3100636 3101079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00341 1 147 EF-hand Containing Proteins AT1G12310 86.486 5.61e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00341 K13448 - gmx:100527568 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00341 10 3100636 3101079 Vian10g00341 10 3100636 3101079 ECH