Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00332 ATGGCTTGTGCACACTTCTACCATTGCGCGGCGAGTCTGATATGCCGGTCCGATACTGGAGCTCGTTTGGGCCAGATTTTGACGCTAGAGAGTCGTCAAAGTTCGTGGCTTGGAACTGAGCTTAGGGTCTCATCATGCAGTCTCAATCTCAGAAATCACGTGCCTGTTTCACGGCGCCGGCCCCTAGCCGTCACTGTCTCCGTTAGCCTTCCCACGGCAAAACCAGAGCGTGCTTCTCCTGGCCAAAACTTTCCCAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGTCTGAATTGGAGGCTAGGAAACTTAAGTATCCTACTACCGGAACTGAAGCCCTTCTCATGGGGGTTCTCATCGAGGGTACTAATCTAGCTGCCAAGTTTTTGCGAGCCAATGGAATTTCACTTCTCAAGGTTCAAGATGAAACAGTGAAGTTACTTGGAAAAGGTGATTTGTTTTTCTTCAGCCCGGAGCATCCTCCACTGACCGATGAGGCTCAGAGAGCTCTTGATTGGGCTGCTGATCGAAAAATAAAATCTGGTGATGACGGGGAAATGACCACGGCGCACATACTTCTTGGTATCTGGTCCGAAGCTGGCTCTCCTGGTCACAAGATTCTGTCCACCCTTGGCTTTAATGATGAAAAAGCTGGAGAGCTTGAGTCCTTAATTTCTAAACCTGGATGTACGGATGATTGA 705 0.4865 MACAHFYHCAASLICRSDTGARLGQILTLESRQSSWLGTELRVSSCSLNLRNHVPVSRRRPLAVTVSVSLPTAKPERASPGQNFPKWSSKAIKSFAMSELEARKLKYPTTGTEALLMGVLIEGTNLAAKFLRANGISLLKVQDETVKLLGKGDLFFFSPEHPPLTDEAQRALDWAADRKIKSGDDGEMTTAHILLGIWSEAGSPGHKILSTLGFNDEKAGELESLISKPGCTDD 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00332 234 Pfam Clp amino terminal domain, pathogenicity island component 100 150 IPR004176 -
Vian10g00332 234 Pfam Clp amino terminal domain, pathogenicity island component 184 226 IPR004176 -
Vian10g00332 234 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 27 233 IPR044217 -
Vian10g00332 234 SUPERFAMILY Double Clp-N motif 86 218 IPR036628 -
Vian10g00332 234 Gene3D - 86 234 IPR036628 -
Vian10g00332 234 ProSiteProfiles Clp repeat (R) domain profile. 84 229 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00332 Vian-Chr10 3007276 3014822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00332 - - gmx:100527844 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00332 10 3007276 3014822 Vian10g00332 10 3007276 3014822 ECH