Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00331 ATGTCAGCAACATGTAAAGTGGGAGACAACCTAAGCTTAAACGATGAAACCAATCAACCCTTGTCACCTCCTCCTCCTCCACTACAAGACCAAAACTATGCAGCCAATTCAGTGAAGATGCTGATCTCAGAGCTAAGAGTTCAACGAGGAATAGCCCTTCCAATGGTAGCCATGAATTTGGCTTGGTTTGCCAAAACAGCCATCACAACAGCTTTTTTAGGCCGTCTCGGGGAGCTCAGCTTAGCAGGTGGAGCTCTCGGCTTCACTTTTGCTAATGTCACTGGCTTCTCTGTTCTCAATGGTATATGCTGTGCCATGGAACCCATATGTGGCCAGGCTCATGGTGCCAAAAACTTCAGGCTCCTTCACAAAACCCTTCTCATGACAATCTTATTGTTGTTATTGGTATCGCTTCCCATCACTTTCTTGTGGCTTAATGTTGACAAAATTTTGATTCATTTTGGCCAACAGCAAGACATCTCCATTGTGGCCAGGACCTATGTTTCCTCTCTCATACCCGACTTGTTTGTTGCCTCGCTCTTCTGTCCCTTAAAGGCCTACTTGAGCTCTCAGAGCATAACTCTTCCCACCATGTTTGGTTCGGCTGTGGCACTAGCTTTCCACATACCCGTTAACATAGTGCTCTCAAAGACCATGGGCCTCAGAGGAGTCGCCATGGCGGTTTGGATTACTGATCTTATTGTTGTGATCCTGCTAGCCATTTATGTTTTAATTCTTGAGAACAAAAAGGGAAGCATGTGGAAGGAAGGAGGGTGGTGGGATCAGAGCGTTCAGGATTGGATCAGGCTGGTGAAGCTTTGTGGATCATGCTGCCTCAACACGTGCCTTGAATGGTGGTGCTATGAGATCCTAGTTTTGCTTACTGGCCACCTCAAGAATGCTAAGCAAGCCGTGGGAGTTTTGGCCATTGTGCTAAACTTCGACTATTTGCTTTTCTCGGTGATGCTGTCGCTGGCCACATGTGTTTCCACCCGTGTCTCAAATGAGCTTGGTGCTAACCAAGCTGGCCTTGCTTACCGATCAGCGTATGTGTCTCTGACATTGGGTTTTATCTCTGGTTGCATAGGCAGTTTGCTGATGGTGGCTGCCAGGGGAATTTGGGGGCCACTGTTTACCCATGATAAGGGAATTATAAAGGGAGTAAATAAGACAATGTTGCTGATGGCTGTGGTGGAAGTGTTTAATTTTCCTTTGGCAGTTTGTGGAGGGATAGTTCGAGGAACAGCACGACCTTGGTTGGGCGCATATGCGAATCTAGGTGGATTTTATTTCCTGGCTTTGCCACTTGGTATTGTTTTTGCCTTCAAGCTCCGTCTAGGGCTTGTTGGACTCTTCATTGGACTTCTTGCTGGTTTAGTTACGTGCTTGACGTTGTTATTGGTATTCATTGCACGGTTAAACTGGGTGGAAGAAGCCGCCAAGGCACAAACACTGACAAGCAACGAGCAGGTTAAGGAATTTCCCAAATATGACGCAGAAACACGAATAGACGCCCGTGAAAAAGTATAA 1530 0.466 MSATCKVGDNLSLNDETNQPLSPPPPPLQDQNYAANSVKMLISELRVQRGIALPMVAMNLAWFAKTAITTAFLGRLGELSLAGGALGFTFANVTGFSVLNGICCAMEPICGQAHGAKNFRLLHKTLLMTILLLLLVSLPITFLWLNVDKILIHFGQQQDISIVARTYVSSLIPDLFVASLFCPLKAYLSSQSITLPTMFGSAVALAFHIPVNIVLSKTMGLRGVAMAVWITDLIVVILLAIYVLILENKKGSMWKEGGWWDQSVQDWIRLVKLCGSCCLNTCLEWWCYEILVLLTGHLKNAKQAVGVLAIVLNFDYLLFSVMLSLATCVSTRVSNELGANQAGLAYRSAYVSLTLGFISGCIGSLLMVAARGIWGPLFTHDKGIIKGVNKTMLLMAVVEVFNFPLAVCGGIVRGTARPWLGAYANLGGFYFLALPLGIVFAFKLRLGLVGLFIGLLAGLVTCLTLLLVFIARLNWVEEAAKAQTLTSNEQVKEFPKYDAETRIDAREKV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00331 509 MobiDBLite consensus disorder prediction 1 29 - -
Vian10g00331 509 MobiDBLite consensus disorder prediction 1 18 - -
Vian10g00331 509 NCBIfam MATE family efflux transporter 54 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian10g00331 509 Pfam MatE 277 438 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian10g00331 509 Pfam MatE 54 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian10g00331 509 PANTHER MULTIDRUG RESISTANCE PROTEIN 39 475 - -
Vian10g00331 509 CDD MATE_eukaryotic 44 481 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00331 Vian-Chr10 3005290 3006819 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00331 K03327 - gmx:100804083 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00331 10 3005290 3006819 Vian10g00331 10 3005290 3006819 ECH