Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00315 ATGGACGAATCGTTCGCTCCACCTCCTCCAATGTCCTCTTCCCAGCACAACCATGTCAAACGAATGTTAAATTCCAATCGCTTCAAATCACCTTCCAAAACAATCTACTCCGACCGCTTCATACCCAGCAGATCCGCTTCCAATTTCGCTCTGTTTAACCTATCGCCGTACACGGAAGACGGTTGTAGCTGCAGCCCCTATGGCAGTGCGCTGCGGAGTGCCTTGTTTGGACCTTCTACACCCAATAAATTCGAAAGCCCTAATATATTTCGTTTCAAATCGGAGACTCGACAGTCCATGCACTCTCTTTCTCTCACTCCTTTTACTTCCCAAGATGTCCTTCTCCCTGGCTATGACTACAATCACAAGCCTCTTAAGCGCCCTCGAAAGATTCCTCCCTCGTCTTTTAAGGTTCTGGATGCGCCAGCTCTGCAAGATGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAGCAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTTTATTTGTGGAATGCTTCCAGCAGTAAGGTAACGAAGCTATGCGATTTGGGGGTTGACGACTCCGTTTGTTCAGTTGGCTGGGCTCCGCTTGGCACCTACTTGGCTGTCGGATCAAACAGTGGAAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCTATAAGAACTATGGAGGGTCATCGATTACGTGTTGGGACCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTAGCCGGGATAAAAGCATTTACCAACGAGACATACGTGTACAGGAGGATTTTGTCAGTAAACTGTCTGGGCATAAATCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCAGGTGGAAATGACAACAAGCTACTTGTTTGGAATCAAAACTCCACCCAGCCCATCCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCGTGGTCTCCTCACACAAATGGACTTCTTGCATCTGGAGGAGGTACTGCAGACCGTAGCATTCGTTTCTGGAGTACAGCCACAAACTCACAGTTAAACTGCATCGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTAAATGAATTGGTGAGCACGCACGGCTACTCCCAGAATCAGATAATGGTTTGGAAATATCCCACCATGTCAAAGCTGGCAACTCTTACAGGCCATACTTACAGAGTTCTTTATCTTTCCATTTCTCCTGATGGACAGACTATTGTCACTGGAGCTGGAGATGAAACCCTAAGATTTTGGAATGTATTCCCTTCACGGAAATCACAGAATACTGAGAGTGAAATTGGAGCATCTTCTTTTGGAAGATCTATCATAAGAAGACATCTACTAATTATGAAAGCCTTAGGGAGCCATGAATTTACAAATATGGCTGCCACTGGTGGAAATCCCTGTCCATGA 1443 0.4553 MDESFAPPPPMSSSQHNHVKRMLNSNRFKSPSKTIYSDRFIPSRSASNFALFNLSPYTEDGCSCSPYGSALRSALFGPSTPNKFESPNIFRFKSETRQSMHSLSLTPFTSQDVLLPGYDYNHKPLKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSSNVLAVALENSVYLWNASSSKVTKLCDLGVDDSVCSVGWAPLGTYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGTLAWSSSLLSSGSRDKSIYQRDIRVQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPILKFCEHTAAVKAIAWSPHTNGLLASGGGTADRSIRFWSTATNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPTMSKLATLTGHTYRVLYLSISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRSIIRRHLLIMKALGSHEFTNMAATGGNPCP 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00315 480 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Vian10g00315 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Vian10g00315 480 FunFam FIZZY-related 2 isoform 1 132 432 - -
Vian10g00315 480 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 18 449 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vian10g00315 480 SUPERFAMILY WD40 repeat-like 145 438 IPR036322 GO:0005515
Vian10g00315 480 Gene3D - 125 433 IPR015943 GO:0005515
Vian10g00315 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Vian10g00315 480 SMART WD40_4 219 256 IPR001680 GO:0005515
Vian10g00315 480 SMART WD40_4 302 344 IPR001680 GO:0005515
Vian10g00315 480 SMART WD40_4 132 173 IPR001680 GO:0005515
Vian10g00315 480 SMART WD40_4 176 216 IPR001680 GO:0005515
Vian10g00315 480 SMART WD40_4 260 299 IPR001680 GO:0005515
Vian10g00315 480 SMART WD40_4 347 387 IPR001680 GO:0005515
Vian10g00315 480 SMART WD40_4 390 429 IPR001680 GO:0005515
Vian10g00315 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Vian10g00315 480 Pfam Anaphase-promoting complex subunit 4 WD40 domain 160 240 IPR024977 -
Vian10g00315 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 430 - -
Vian10g00315 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Vian10g00315 480 Pfam WD domain, G-beta repeat 304 344 IPR001680 GO:0005515
Vian10g00315 480 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Vian10g00315 480 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00315 Vian-Chr10 2889029 2895167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00315 254 430 Miscellaneous Gene Families AT5G08390 24.719 4.22e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00315 K03364 - gmx:100785726 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00315 10 2889029 2895167 Vian10g00315 10 2889029 2895167 ECH
Vian1g01331 1 14451091 14457689 Vian10g00315 10 2889029 2895167 PCT