Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00309 ATGCACGATATTTTGTTTCCTTCTCATCATGTTTCATCCCCGATTTCACATTTTGCCGTAATTGCACTTGTGGATTCAGAGAAGCAGATAAAAGTGGTTCTCTGCTCCTATGGCCTGGCGTTAGTTTTGAAGGATATCGGTTCTAACTTGTCAGTAAACTTTCATGATTCCGATAAGAGGTGCTGTTATCTAGGCATCATTTTTAAATTGATGCGTTATGGTGTAATTGCTTGCCAACTGCCAGAGGCAATTTGTGATGGGAGACCCACCATTCATAGGCCCCAAAGTCGCGTTTATATGGTTACTTCAAATATTTTTCTGAGTAAAAGGTTATCAAGTTCCATGGATGATGAGTTTTTCTACGGAAACAAAGCGCCATCTGGTGTCATAAAAGCGATAAAGTTTGATGTTTTAACTGAAAATGATATAGAGAAAGTCTCTGTTTTGGAGATAAATGCAGCCGGGCAAGTCACTGGGTCTATGTTGGGATTTCCAAATATATCTGACGAGTGTGCCACTTGTGGTTCTAAAGACAAAAAGTTTTGTGAAGGTGTAAATGGACACAGTCATTTTGGAGTAATCAAATTTCCATTTCCCGTACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAATAAGATTTGCCCGGTTTGCAAAACTATTCGTCATAAATCTAAGGGAAATGGGATGGGCCGTTATCCATCCATGAAGTTTAAATTTTCGTCCAATGATCTCTACAAAAGAACAGCAATTATTGTTGAAGTAAATGATAAAGTTTCAAAGAAAACTTTGGGACGAAGCTTGCCAGCTGATTACTGGGATTTTATTCCTTATGATGCTCAACAAGAAGAAAATTATCTAAATAGAAGGGTTTTATCACCAGGACAGCTAAATCCTGATAAAACACCTAATACTATTTTTGCTGATATCCAAAAGAAAAAAGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTACGTTCCGTGCCGTTGTTGTTGGTGATCCATACCTTGAGCTCAGTGAAATTGGTATACCTTGCCATATTGCTGAAAGTTTGCACGTTTCTGAGTATGTTAACAGGCAGAATTTGGAAAAGCTGCTTTATTGTTGTGAGCTACGCCTGTTAGAGAAGGGAGCGATAAAGGTTTGCAGAAAGGGTAGTTCTATTAATCTGTTTAAAAAGGAAGATCTACGGATAGGAGACCAATTTTACAGGCCTCTTTGTGATGGGGATAAGGTTCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACTGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGCATTAACCCACTTTGTTGTTCCCCGTTTCGTGGGGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAATGAGCTTGTTGCTTTAGATAGGCAATTGTTTAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCTGAGGATAGTTTGACTGCTGCGTATTTGCTAATGGAAGATGGGGTCCTTTTAGATGTTTACCAGATGCAGCAGCTTCAAATGCTTTGTAACAAAGGTTTAGCTCCTCCTGGAATTGTAAAAGCTCCTTCAAGCAAAAGCTCATTTTGGAGTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCTGATTTTGGATATTCCTTTTCTTCGGATGGTGTTGTTGTTAGTGATGGGGAGCTTTTATCTTCTTTTGAGGCTTCTGGATGGTTACGTGATTCTGACTGCAATGTTTTCCAGAGTCTTGTGGAACATTTTCAAGGGAAATCTCTAAACTTTTTGTTTGCTGCGCAGAATGTTTTATGTGAATGGTTATCTATGATTGGTTTTAGTGTTTCACTCTCAGATTTGTACCTCTCTTCTGATTCCTATGCACGAAAAAACATGATTGAGGAAATACTTTATGGTTTACAAGATGCAGAGAAGGCATGTGATTTCAAGCAGTTATTGTTGGATTGCTATTGTGATTTTTTGTCTGGAAATCATGAAGAGAGTGAAAATTCTATGATTGTTGATGCAGACAATCTGAATAATGAAAGACAAATATCTGCTGCTCTCAGTCAAGCATCAGTTGATGCTTTTAGGCATGTTTTTCGCAATATTCAAAGTTTAGCTGACAAATATGCATGTACAGACAATACTTTTCTTGCCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAGATTAGCGCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTCCGCTTATCTTACAGACTACCCCGTCATCTTTCATGTTCTGCTTGGAATAGTGAAAAGGGGCTTGATTCAATCCAGAAATACTCTGGTACCCTTAAATCTGTTCAGTCTTACATTCCATGTGCTGTGGTCAAAAGCTCATTTCTGACTGGGTTGAATCCACTTGAATGTTTTGTTCATTCTGTGGCAACCCGTGCTAGTGGTTTCAGTGAAAATGCAGACGTTCCTGGAACATTAACACGGAGATTGATGTTCTTCATGCGTGATCTGTTTGCTGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTTATTCAGTTTTCTTATGATATTGAAGAGAACTCTTCATGTGATCAAAATTTAAAAGAGTATGCTATTGGTGGTGAACCAGTTGGGGCACTTTCTGCTTCTGCAGTTTCAGAAGCTGGATACAGTGCTTTGGATCAACCAGTTAGTCTACTTGAAACGTCACCTTTGCTGAATTTGAAAAATGTTCTTGAATGCGGTTCAAGGAAAAAAAAGGGCGACCAGTCTGTGACTTTATTTTTGTCTGAAAAAGTTGGTAAACAGAGACATGGGTTTGAATATGCAGCTTTAGAAGTTAAGAATTATTTGGAAAGATTGTTCTTCTCAAAAATTGTTTCTACTGTGATGATAATATTCACCCCACATGATAGCCGCAGCCTAGAGAAAGGCTGTCCTTGGTATTTACTGTCCTTGAGTGCTATACTGGGAGCTAGTGAAGGTTACAACAGTATATGTAACTACCTCTATTCAGAGTTCTATGCTTTTCTAAAGTGTTCTGGTTATTCCGCGGTTAAGGAAGGTGATGACACTTTTGTAGATAATAAAGAAGACAGTGATGATTGCATTACGGTCACAGTTGTTGAAAATTCTGAGAATCCTATCCAACTGGTTTCCGTTCGGGACTTGATGATACCTTTTTTTCTAGGAACAACAATAAAAGGATTTATGGACATCAAGAAGGTTGATATTCTCTGGAATAATCAATCAAAAGTAACAAATTCTTACAGTGGTTCTTCTGGTGAACTGTACTTGAGGGTTACTGTGGCCAGCGACGGTAACACTGGAAGGTTCTGGGGTGTACTTGTAAATCATTGTCACAAGATAATGCAGATAATTGACTGGCCACGGAGTCATCCAGACAGCATAAGTTATATCTCATCAGCCTTTGGAATTGATGTAGCCTGGCAATACTATTACAAGAGTTTGGCATCTGCAATATGTGACACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTTGCCAATAGTCTGTCAGCTAGTGGAGAATTTGTAGGATTAAATGCTAAAGGCATGGCACTACAACGAGAACATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCAGGTAGGAGCTTTATAAAAGCTGCCAAGTCTGGAATCACGGATAATCTTCGGGGCAGCCTGGATGCATTGGCTTGGGGAAACTGTCCCTCTTTGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGATAAAGGCTTTATTTAACAGGGGCCGCACGAACGCAGGCCCCCTCTTCACAAATTATGATGAAGTCTCTACCACTTGTGAGACTTCAGAGCAAGACCCCACCCAAGGTGCAAGGGAGGGATATGAGGTAGCCAAGTCTGTAGATGTGTATAAGCTGCTAGAAGCCAGTTTTGACAAGCCGAACAATAAGATTGGTATATATTCTCACAACAATTCATCTGACAAATGTGGTTCTGAGTTTAGGCATAAGAATGGCTATGCCTTTAAAGAGGGAAAGCAGTGGAAAAACATTGTAAGAAATTTTGTGACGGTAAATGATATTCAGAAGCTGACTATTGCTTCAAGGTGCATATTGAACAAGTATGCGATTGATGAGCTGATAAGTGAGTTTGACAGATCTACAATGCTAAGAGTTCTGAATTTCCATCCTCGTAGAAGTGAGAAATTGGGTATTGGACCACAGGACATTAAGGTTGGATGGCATCCTAAATTTACGGATAGCCGCTGCTTCCATATAGTACGAACTGATGGAACTGTTGAAGATTTTTCATACCGCAAATGCATACTTGGTGCTCTTGAAATCGTTGATCCAAAAATGTCGAAGATCCAGAAGAAAAAATGGTCAGGACGTGATGACACAAATTCAATGCGTGTCCAAGCATAG 4527 0.3945 MHDILFPSHHVSSPISHFAVIALVDSEKQIKVVLCSYGLALVLKDIGSNLSVNFHDSDKRCCYLGIIFKLMRYGVIACQLPEAICDGRPTIHRPQSRVYMVTSNIFLSKRLSSSMDDEFFYGNKAPSGVIKAIKFDVLTENDIEKVSVLEINAAGQVTGSMLGFPNISDECATCGSKDKKFCEGVNGHSHFGVIKFPFPVLHPYFMSEIAQILNKICPVCKTIRHKSKGNGMGRYPSMKFKFSSNDLYKRTAIIVEVNDKVSKKTLGRSLPADYWDFIPYDAQQEENYLNRRVLSPGQLNPDKTPNTIFADIQKKKVAENACNSSGLRWIKDVVLGKRNDSTFRAVVVGDPYLELSEIGIPCHIAESLHVSEYVNRQNLEKLLYCCELRLLEKGAIKVCRKGSSINLFKKEDLRIGDQFYRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPFRGDFDGDCLHGYIPQSVSARVELNELVALDRQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLAPPGIVKAPSSKSSFWSGKQLFSMLLPSDFGYSFSSDGVVVSDGELLSSFEASGWLRDSDCNVFQSLVEHFQGKSLNFLFAAQNVLCEWLSMIGFSVSLSDLYLSSDSYARKNMIEEILYGLQDAEKACDFKQLLLDCYCDFLSGNHEESENSMIVDADNLNNERQISAALSQASVDAFRHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCSAWNSEKGLDSIQKYSGTLKSVQSYIPCAVVKSSFLTGLNPLECFVHSVATRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYDIEENSSCDQNLKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLETSPLLNLKNVLECGSRKKKGDQSVTLFLSEKVGKQRHGFEYAALEVKNYLERLFFSKIVSTVMIIFTPHDSRSLEKGCPWYLLSLSAILGASEGYNSICNYLYSEFYAFLKCSGYSAVKEGDDTFVDNKEDSDDCITVTVVENSENPIQLVSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKVTNSYSGSSGELYLRVTVASDGNTGRFWGVLVNHCHKIMQIIDWPRSHPDSISYISSAFGIDVAWQYYYKSLASAICDTGKSILPKHLRLLANSLSASGEFVGLNAKGMALQREHASVSSPFVQACFSNPGRSFIKAAKSGITDNLRGSLDALAWGNCPSLGTSGLFDIIYSEKIKALFNRGRTNAGPLFTNYDEVSTTCETSEQDPTQGAREGYEVAKSVDVYKLLEASFDKPNNKIGIYSHNNSSDKCGSEFRHKNGYAFKEGKQWKNIVRNFVTVNDIQKLTIASRCILNKYAIDELISEFDRSTMLRVLNFHPRRSEKLGIGPQDIKVGWHPKFTDSRCFHIVRTDGTVEDFSYRKCILGALEIVDPKMSKIQKKKWSGRDDTNSMRVQA 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00309 1508 PANTHER DNA-DIRECTED RNA POLYMERASE 331 1284 IPR045867 GO:0003899|GO:0006351
Vian10g00309 1508 Gene3D - 685 825 IPR038120 -
Vian10g00309 1508 Gene3D RNA polymerase Rpb1, domain 3 503 649 IPR042102 -
Vian10g00309 1508 Pfam RNA polymerase Rpb1, domain 4 720 794 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vian10g00309 1508 SMART rpolaneu7 209 523 IPR006592 GO:0003677|GO:0003899|GO:0006351
Vian10g00309 1508 Gene3D - 1386 1478 - -
Vian10g00309 1508 Pfam RNA polymerase Rpb1, domain 3 500 647 IPR007066 GO:0003677|GO:0003899|GO:0006351
Vian10g00309 1508 CDD RNAP_IV_RPD1_N 138 872 IPR040403 -
Vian10g00309 1508 Pfam Protein of unknown function (DUF3223) 1405 1476 - -
Vian10g00309 1508 Gene3D RNA polymerase II, clamp domain 122 232 IPR044893 -
Vian10g00309 1508 Gene3D RNA polymerase ii 369 421 - -
Vian10g00309 1508 Pfam RNA polymerase Rpb1, domain 2 336 493 IPR000722 GO:0003677|GO:0003899|GO:0006351
Vian10g00309 1508 Gene3D - 331 502 - -
Vian10g00309 1508 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 125 1286 - -
Vian10g00309 1508 FunFam DNA-directed RNA polymerase subunit 503 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00309 Vian-Chr10 2815650 2828053 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00309 K16250 - gmx:100796185 1854.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00309 10 2815650 2828053 Vian10g00309 10 2815650 2828053 ECH